breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,296,191	0	A	C	47.6%	‑2.3 / 21.4	21	intergenic (+397/+245)	gltP/yjcO	glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*	NC_000913	4,296,190	0	A	G	40.0%	1.3 / 16.9	21	intergenic (+396/+246)	gltP/yjcO	glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	0 (0.000)	22 (0.280)	18/528	3.5	100%	intergenic (+253/‑1684)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+1453/‑484)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
*	?	NC_000913	= 1978502	0 (0.000)	19 (0.250)	17/520	3.6	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
	?	NC_000913	1979279 =	0 (0.000)					intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein
*	?	NC_000913	= 838471	45 (0.570)	3 (0.040)	3/530	9.0	6.4%	intergenic (‑15/+59)	ybiI/ybiX	DksA‑type zinc finger protein/Fe(II)‑dependent oxygenase superfamily protein
	?	NC_000913	838478 =	43 (0.550)					intergenic (‑22/+52)	ybiI/ybiX	DksA‑type zinc finger protein/Fe(II)‑dependent oxygenase superfamily protein
*	?	NC_000913	= 602650	101 (1.270)	3 (0.040)	3/534	9.1	2.9%	coding (692/1377 nt)	pheP	phenylalanine transporter
	?	NC_000913	602654 =	101 (1.270)					coding (696/1377 nt)	pheP	phenylalanine transporter