mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,190 | 0 | A | G | 28.6% | 18.5 / 10.6 | 22 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 27.3% | 13.5 / 16.1 | 22 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 96 (1.140) | 21 (0.270) | 17/494 | 3.9 | 21.6% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 62 (0.790) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 92 (1.100) | 12 (0.150) | 12/494 | 5.3 | 13.9% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 62 (0.790) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 2518116 | 72 (0.860) | 3 (0.050) | 3/364 | 7.6 | 5.7% | noncoding (1/76 nt) | alaX | tRNA‑Ala |
| ? | NC_000913 | 2518232 = | 50 (0.860) | intergenic (‑1/‑235) | alaW/yfeC | tRNA‑Ala/DUF1323 family putative DNA‑binding protein | |||||
| * | ? | NC_000913 | = 200412 | 80 (0.950) | 4 (0.050) | 4/512 | 9.0 | 4.8% | intergenic (+52/‑70) | bamA/skp | BamABCDE complex OM biogenesis outer membrane pore‑forming assembly factor/periplasmic chaperone |
| ? | NC_000913 | = 200419 | 81 (0.990) | intergenic (+59/‑63) | bamA/skp | BamABCDE complex OM biogenesis outer membrane pore‑forming assembly factor/periplasmic chaperone | |||||
| * | ? | NC_000913 | = 3103697 | 56 (0.670) | 3 (0.040) | 3/510 | 9.6 | 5.2% | coding (685/1053 nt) | mutY | adenine DNA glycosylase |
| ? | NC_000913 | = 3103752 | 54 (0.660) | coding (740/1053 nt) | mutY | adenine DNA glycosylase | |||||
| * | ? | NC_000913 | 3563404 = | 95 (1.130) | 3 (0.040) | 3/512 | 9.7 | 3.2% | coding (1392/1506 nt) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| ? | NC_000913 | 3563422 = | 90 (1.100) | coding (1410/1506 nt) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding | |||||
| * | ? | NC_000913 | = 3255173 | 87 (1.040) | 4 (0.050) | 3/526 | 9.8 | 4.4% | coding (131/165 nt) | yhaL | uncharacterized protein |
| ? | NC_000913 | 3255177 = | NA (NA) | coding (135/165 nt) | yhaL | uncharacterized protein | |||||
| * | ? | NC_000913 | = 2996044 | 138 (1.640) | 3 (0.040) | 3/522 | 9.8 | 2.1% | pseudogene (317/399 nt) | ygeO | pseudogene, orgA family, part of T3SS PAI ETT2 remnant |
| ? | NC_000913 | 2996048 = | 144 (1.730) | pseudogene (313/399 nt) | ygeO | pseudogene, orgA family, part of T3SS PAI ETT2 remnant | |||||
| * | ? | NC_000913 | 668008 = | 56 (0.670) | 3 (0.040) | 3/526 | 9.8 | 4.8% | coding (210/1902 nt) | mrdA | penicillin‑binding protein 2, transpeptidase involved in peptidoglycan synthesis |
| ? | NC_000913 | 668030 = | 63 (0.750) | coding (188/1902 nt) | mrdA | penicillin‑binding protein 2, transpeptidase involved in peptidoglycan synthesis | |||||
| * | ? | NC_000913 | = 183009 | 99 (1.180) | 3 (0.040) | 3/522 | 9.8 | 3.0% | coding (547/1158 nt) | cdaR | carbohydrate diacid regulon transcriptional regulator; autoregulator |
| ? | NC_000913 | 183013 = | 94 (1.130) | coding (551/1158 nt) | cdaR | carbohydrate diacid regulon transcriptional regulator; autoregulator | |||||