Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1211101	1212749	1649	28 [27]	[23] 28	[mcrA]–[ycgX]	[mcrA],icdC,iraM,[ycgX]

TAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCATTATGCTAATGCCTTACTGAATTATGAAGCATTTCTTAAGTATCCAACTTTAGCTAGATTAATGGTTTATTATTTTCTACATCTTCAATATATAAAAGC‑GTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCCAGTGTTG‑AACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCTTTTATTTTAGCAGGGTTCTTGGTCGTACTAACTTTTAACAGGTTCCTGGTTCCTCTTAATAACAAAACCGTATCATCGTGAGTAATAATTCTGATGTTATCCGTAGCCAGATAATAAATGTAATGTGCAATACGGTGATGTTTTAATTCTGAATA  >  NC_000913/1212518‑1213038                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                                  tAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCATTATGCTAATGACTTACTGCATTATGAAGCATTTCTTAAGTATCCAACTTTAGCTAAATTAATGGTTTATTATTTTCTACATTTTATATATATAAATGC‑TTATTATCAATTGCGTAGTATCTGAGTTCGTTATTATTAACATACGTAActcccagga                                                                                                                                                                                                                                           >  2:681038/1‑281 (MQ=255)                                                                                                                     tGCACTTTTATTTCCATTATGCTAATGCCTTACTGAATTATGAAGCATTTCTTAAGTATCCAACTTTAGCTAGATTAATGGTTTATTATTTTCTACATCTTCAATATATAAAAGC‑GTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCATGCCAGTGTTG‑AACAGTATTCCCGAAATGTAGATTTTCCGAAAATATGAAGCAATGCGGCCTCTTTTATTTTAGCAGGGTTCTTGGTCGTACTAACTTTTacc                                                                                                                      >  1:759123/1‑287 (MQ=255)                                                                                                                          ttttATTTCCATTATGCTAATGCCTTACTGAATTATGAAGCATTTCTTAAGTATCCAACTTTAGCTAGATTAATGGTTTATTATTTTCTACATCTTCAATATATAAAAGC‑GTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCCAGTGTTG‑AACAGTATTCCCGAAATGTAGATTTTCCGCAAata                                                                                                                                                                               <  2:594180/227‑1 (MQ=255)                                                                                                                          ttttATTTCCATTATGCTAATGCCTTACTGAATTATGAAGCATTTCTTAAGTATCCAACTTTAGCTAGATTAATGGTTTATTATTTTCTACATCTTCAATATATAAAAGC‑GTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCCAGTGTTG‑AACAGTATTCCCGAAATGTAGATTTTCCGCAAata                                                                                                                                                                               >  1:594180/1‑227 (MQ=255)                                                                                                                                    aTTATGCTAATGCCTTACTGAATTATGAAGCATTTCTTAAGTATCCAACTTTAGCTAGATTAATGGTTTATTATTTTCTACATCTTCAATATATAAAAGC‑GTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCCAGTGTTG‑AACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCTTTTATTTTAGCAGGGTTCTTGGTCGTACTAACTTTTAACAggttcctggttcct                                                                                                       >  1:251338/1‑289 (MQ=255)                                                                                                                                             aTGCCTTACTGAATTATGAAGCATTTCTTAAGTATCCAACTTTAGCTAGATTAATGGTTTATTATTTTCTACATCTTCAATATATAAAAGC‑GTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAAc                                                                                                                                                                                                                                                            >  1:106252/1‑132 (MQ=255)                                                                                                                                             aTGCCTTACTGAATTATGAAGCATTTCTTAAGTATCCAACTTTAGCTAGATTAATGGTTTATTATTTTCTACATCTTCAATATATAAAAGC‑GTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAAc                                                                                                                                                                                                                                                            <  2:106252/132‑1 (MQ=255)                                                                                                                                             aTGCCTTACTGAATTATGAAGCATTTCTTAAGTATCCAACTTTAGCTAGATTAATGGTTTATTATTTTCTACATCTTCAATATATAAAAGC‑GTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCCAGTGTTG‑AACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGc                                                                                                                                                                 >  1:139212/1‑222 (MQ=255)                                                                                                                                             aTGCCTTACTGAATTATGAAGCATTTCTTAAGTATCCAACTTTAGCTAGATTAATGGTTTATTATTTTCTACATCTTCAATATATAAAAGC‑GTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCCAGTGTTG‑AACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGc                                                                                                                                                                 <  2:139212/222‑1 (MQ=255)                                                                                                                                                    aCTGAATTATGAAGCATTTCTTAAGTATCCAACTTTAGCTAGATTAATGGTTTATTATTTTCTACATCTTCAATATATAAAAGC‑GTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCCAGTGTTG‑AACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGACGCAATGCTGCCTCTTTTATTTTAGCAGGGTTCTTGGTCGTACTACCTTTTAACAGGTTCTTGTTTCCTCTTACTAACAAAACCg                                                                                       >  2:492811/1‑289 (MQ=255)                                                                                                                                                                   ttattttAATTATCAAACTTTATCTATATTATTGGTTTATTATTTTCTACATCTTCAATATATCAAAGC‑GTATTATCAATGGCTTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCCAGTGTTG‑AACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCTTTTATTTTAGCAGGGTTCTTGGTCGTACTAACTTTTAACAGGTTCCTGGTTCCTCTTAATAACAAAACCGTATCATCGTGAGtaa                                                                        <  2:251338/284‑1 (MQ=255)                                                                                                                                                                       cTTAAGTATCCAACTTTAGCTAGATTAATGGTTTATTATTTTCTACATCTTCAATATATAAAAGC‑GTATTATCAATGTCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGACAACGCCCGCGCCTGCCAGTGTTT‑AACAGTATTCTCGAAATGTAGATTTCCCGCTCATATGATGCAATGCGGCCTCTTTTATTTTAGCAGCGTTCTTTGTCGTACTAACTTTTAACAGGTTCCTGCTTCCTCTTATTAATCAAACCGTATAATCGCTAGTactaat                                                                    >  2:117959/1‑289 (MQ=255)                                                                                                                                                                                              aTTAATGGTTTATTATTTACTACAGCTTCAATATATAAAAGC‑GTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCCAGTGTTG‑AACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCTTTTATTTTAGCAGGGTTCTTGGTCGTACTAACTTTTAACAGGTTCCTGGTTCCTCTTAATAACAAAACCGTATCATCGTGAGTAATAATTc                                                                  <  1:13904/268‑1 (MQ=255)                                                                                                                                                                                                        tattatTTTCTACATCTTCAATATATAAAAGC‑GTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCCAGTGTTG‑AACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCTTTTATTTTAGCAGGGTTCTTGGTCGTACTAACTTTTAACAGGTTCCTGGTTCCTCTTAATAACAAAACCGTATCATCGTGAGTAATAATTCTGATGTTATCCGTAGCCAGATAATAaatgta                                   >  1:613697/1‑289 (MQ=255)                                                                                                                                                                                                        tattatTTTCTACATCTTCAATATATAAAAGC‑GTATTATCAAGGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCCAGTGTTG‑AACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCTTTTATTTTAGCAGGGTTCTTGGTCGTACTAACTTTTAACAGGTTCCTGGTTCCTCTTAATAACAAAACCGTATCATCGTGAGTAATAATTCTGATGTTATCCGTAGCCAGATAATAaatgta                                   <  1:492811/289‑1 (MQ=255)                                                                                                                                                                                                        tattatTTATTACACCTTCAATA‑ATAAAAACAGTATTATAAAGTGCGGCGTAACTGCGTTTTTTATGAGTAACATCAGGAACCCTGCGGAAAACTCCCGCGCCTGCCAG‑GTTGTAACAGTATTCCAGAAATGTAGAGTTTCCGCAAATATGAAGCAATGCGGCCTCTTTGAGTTTAGCAGAGTTCTTGGTCTTACTAACTTTTAACAGGTTCCTGGTGCCTCTGAATAACAAAACCGTATCATCGTGAGTAATAATTCTGATGTTATCCGTAGCCAGATAATAaatgta                                   <  2:759123/289‑1 (MQ=255)                                                                                                                                                                                                        tattaaTTTCTAAATATTAAATATATAAAAGC‑GTATTATCAATGGCGTAGTAACTGCGTTTGTTAAGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCCAGTGTTG‑AACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCTTTTATTTTAGCAGGGTTCTTGGTCGTACTAACTTTTAACAGGTTCCTGGTTCCTCTTAATAACAAAACCGTATCATCGTGAGTAATAATTCTGATGTTATCCGTAGCCAGATAATAaatgta                                   <  2:613697/289‑1 (MQ=255)                                                                                                                                                                                                                         gaaaTATATACAAGC‑GTATGAGACATTGCTGAGTAATTGCGTTTGTTATGATTAACATCAGTAACCAACCGGAAAACGCCCGCGCCTGCCAGTGTTG‑AACAGTATGCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCTTTTATTTTAGCAGGGTTCTTGGTCGTACTAACTTGTAACAGGTTCCTGGTTCCTCTTAATAACAAAACCGTATCATCGTGAGTAATAATTCTGATGTTATCCGTAGCCAGATAATAAATGTAATGTGCAATACGGTGa                   <  2:397122/286‑1 (MQ=255)                                                                                                                                                                                                                                  aaaaGC‑GTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCCAGTGTTG‑AACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCTTTTATTTTAGCAGGGTTCTTGGTCGTACTAACTTTTAACAGGTTCCTGGTTCCTCTTAATAACAAAACCGTATCATCGTGAGTAATAATTCTGATGTTATCCGTAGCCAGATAATAAATGTAATGTGCAATACGGTGa                   >  1:605106/1‑279 (MQ=255)                                                                                                                                                                                                                                  aaaaGC‑GTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCCAGTGTTG‑AACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCTTTTATTTTAGCAGGGTTCTTGGTCGTACTAACTTTTAACAGGTTCCTGGTTCCTCTTAATAACAAAACCGTATCATCGTGAGTAATAATTCTGATGTTATCCGTAGCCAGATAATAAATGTAATGTGCAATACGGTGa                   <  2:605106/279‑1 (MQ=255)                                                                                                                                                                                                                                       c‑GTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTa                                                                                                                                                                                                                                                              >  1:607758/1‑40 (MQ=255)                                                                                                                                                                                                                                       c‑GTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTa                                                                                                                                                                                                                                                              <  2:607758/40‑1 (MQ=255)                                                                                                                                                                                                                                       c‑GTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCCAGTGTTG‑AACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCTTTTATTTTAGCAGGGTTCTTGGTCGTACTAACTTTTAACAGGTTCCTGGTTCCTCTTAATAACAAAACCGTATCATCGTGAGTAATAATTCTGATGTTATCCGTAGCCAGATAATAAATGTAATGTGCAATACGGTGATGTTTTAATTCTGaa    >  1:181131/1‑289 (MQ=255)                                                                                                                                                                                                                                          tattatCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCCAGTGTTG‑AACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCTTTTATTTTAGCAGGGTTCTTGGTCGTACTAACTTTTAACAGGTTCCTGGTTCCTCTTAATAACAAAACCGTATCATCGTGAGTAATAATTCTGATGTTATCCGTAGCCAGATAATAAATGTAATGTGCAATACGGTGATGTTTTAAtt         >  1:397122/1‑282 (MQ=255)                                                                                                                                                                                                                                          tattatCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCCAGTGTTG‑AACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCTTTTATTTTAGCAGGGTTCTTGGTCGTACTAACTTTTAACAGGTTCCTGGTTCCTCTTAATAACAAAACCGTATCATCGTGAGTAATAATTCTGATGTTATCCGTAGCCAGATAATAAATGTAATGTGCAATACGGTGATGTTTTAATTCTGAATa  >  2:282566/1‑289 (MQ=255)                                                                                                                                                                                                                                          tattatCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCCAGTGTTG‑AACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCTTTTATTTTAGCAGGGTTCTTGGTCGTACTAACTTTTAACAGGTTCCTGGTTCCTCTTAATAACAAAACCGTATCATCGTGAGTAATAATTCTGATGTTATCCGTAGCCAGATAATAAATGTAATGTGCAATACGGTGATGTTTTAATTCTGAATa  >  1:444364/1‑289 (MQ=255)                                                                                                                                                                                                                                          tattatCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCCAGTGTTG‑AACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCTTTTATTTTAGCAGGGTTCTTGGTCGTACTAACTTTTAACAGGTTCATGGTTCCTCTTAATAACAAAACCGTATCATCGTGAGTAATAATTCTGATGTTATCCTTAGCCAGATAATAAATGTAATGTTCATTACGTTGATGTTTTAATTCttacta  >  2:502381/1‑284 (MQ=255)                                                                                                                                                                                                                                          tattatCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCAAGTGTTG‑AACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCTTTTATTTTAGCAGGGTTCTTGGTCGTACGAAATTTTAACAGGTTCCTGGTTCCTCTTAATAACAAACCCGTATCATCGTGAGTAATAATTCTGATTTTATCAGTAGAAAGAAAATAAATGTAATGTAGAATACGGTAGTGTTTTAAttagcaata  >  2:595239/1‑282 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                                  TAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCATTATGCTAATGCCTTACTGAATTATGAAGCATTTCTTAAGTATCCAACTTTAGCTAGATTAATGGTTTATTATTTTCTACATCTTCAATATATAAAAGC‑GTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCCAGTGTTG‑AACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCTTTTATTTTAGCAGGGTTCTTGGTCGTACTAACTTTTAACAGGTTCCTGGTTCCTCTTAATAACAAAACCGTATCATCGTGAGTAATAATTCTGATGTTATCCGTAGCCAGATAATAAATGTAATGTGCAATACGGTGATGTTTTAATTCTGAATA  >  NC_000913/1212518‑1213038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑