mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 30.2% | 60.0 / 21.7 | 43 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 16 (0.220) | 13/514 | 4.3 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 1207805 | 65 (0.860) | 9 (0.130) | 9/498 | 5.3 | 12.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 64 (0.900) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 72 (0.950) | 10 (0.140) | 8/498 | 5.7 | 13.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 64 (0.900) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 795632 | 108 (1.430) | 3 (0.040) | 3/506 | 8.3 | 3.5% | coding (544/774 nt) | modA | molybdate ABC transporter periplasmic binding protein; chlorate resistance protein |
| ? | NC_000913 | 796267 = | 60 (0.830) | coding (406/690 nt) | modB | molybdate ABC transporter permease; chlorate resistance protein | |||||
| * | ? | NC_000913 | = 1773819 | 55 (0.740) | 7 (0.090) +GGTT |
3/512 | 8.4 | 11.3% | coding (31/867 nt) | ydiB | quinate/shikimate 5‑dehydrogenase, NAD(P)‑binding |
| ? | NC_000913 | 1773820 = | 55 (0.730) | coding (32/867 nt) | ydiB | quinate/shikimate 5‑dehydrogenase, NAD(P)‑binding | |||||
| * | ? | NC_000913 | = 4080341 | 117 (1.550) | 3 (0.040) | 3/528 | 8.5 | 2.5% | coding (888/930 nt) | fdhE | formate dehydrogenase formation protein |
| ? | NC_000913 | 4080345 = | 117 (1.550) | coding (884/930 nt) | fdhE | formate dehydrogenase formation protein | |||||
| * | ? | NC_000913 | = 3034485 | 88 (1.160) | 3 (0.040) | 3/528 | 8.5 | 3.3% | coding (690/1518 nt) | lysS | lysine tRNA synthetase, constitutive |
| ? | NC_000913 | 3034489 = | 88 (1.170) | coding (686/1518 nt) | lysS | lysine tRNA synthetase, constitutive | |||||