breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,050,853	0	C	A	21.2%	53.9 / 11.8	33	intergenic (‑186/+262)	gcvT/ubiI	aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1207790 =	36 (0.850)	6 (0.150)	6/500	3.6	15.2%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913	1209619 =	33 (0.820)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
*	?	NC_000913	= 1207805	36 (0.850)	4 (0.100)	4/500	4.5	10.7%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913	= 1209602	33 (0.820)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
*	?	NC_000913	555285 =	39 (0.920)	3 (0.070)	3/520	5.2	7.2%	coding (675/1386 nt)	cysS	cysteinyl‑tRNA synthetase
	?	NC_000913	= 555281	39 (0.940)					coding (671/1386 nt)	cysS	cysteinyl‑tRNA synthetase