mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 21 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4444843 | 127 (0.850) | 3 (0.020) | 3/546 | NT | 2.4% | coding (732/3780 nt) | tamB | translocation and assembly module for autotransporter export, inner membrane subunit |
| ? | NC_000913 | = 4444969 | 125 (0.870) | coding (858/3780 nt) | tamB | translocation and assembly module for autotransporter export, inner membrane subunit | |||||
| * | ? | NC_000913 | = 4251258 | 160 (1.080) | 3 (0.020) | 3/548 | NT | 1.9% | pseudogene (298/1323 nt) | yjbI | pseudogene, SopA‑related, pentapeptide repeats‑containing |
| ? | NC_000913 | = 4251266 | 157 (1.090) | pseudogene (306/1323 nt) | yjbI | pseudogene, SopA‑related, pentapeptide repeats‑containing | |||||
| * | ? | NC_000913 | = 4115653 | 157 (1.060) | 3 (0.020) | 3/548 | NT | 1.9% | intergenic (‑74/+61) | glpX/glpK | fructose 1,6‑bisphosphatase II/glycerol kinase |
| ? | NC_000913 | = 4115657 | NA (NA) | intergenic (‑78/+57) | glpX/glpK | fructose 1,6‑bisphosphatase II/glycerol kinase | |||||
| * | ? | NC_000913 | = 3992044 | 155 (1.040) | 3 (0.020) | 3/562 | NT | 1.9% | coding (892/2547 nt) | cyaA | adenylate cyclase |
| ? | NC_000913 | 3992051 = | 157 (1.060) | coding (899/2547 nt) | cyaA | adenylate cyclase | |||||
| * | ? | NC_000913 | = 3920226 | 155 (1.040) | 5 (0.030) | 5/552 | NT | 3.2% | coding (178/534 nt) | atpH | F1 sector of membrane‑bound ATP synthase, delta subunit |
| ? | NC_000913 | = 3920278 | 153 (1.050) | coding (126/534 nt) | atpH | F1 sector of membrane‑bound ATP synthase, delta subunit | |||||
| * | ? | NC_000913 | = 3798233 | 177 (1.190) | 3 (0.020) | 6/538 | NT | 1.7% | intergenic (+26/+6) | waaL/waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| ? | NC_000913 | = 3798235 | 174 (1.230) | intergenic (+28/+4) | waaL/waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis | |||||
| * | ? | NC_000913 | 3751076 = | 306 (2.060) | 4 (0.030) | 4/548 | NT | 1.3% | pseudogene (159/192 nt) | ysaD | pseudogene, internal sequence remnant |
| ? | NC_000913 | 3751161 = | 307 (2.120) | coding (708/741 nt) | yiaT | putative outer membrane protein | |||||
| * | ? | NC_000913 | 3743332 = | 252 (1.690) | 3 (0.020) | 3/552 | NT | 1.2% | coding (600/999 nt) | yiaK | 2,3‑diketo‑L‑gulonate reductase, NADH‑dependent |
| ? | NC_000913 | = 3743328 | 243 (1.670) | coding (596/999 nt) | yiaK | 2,3‑diketo‑L‑gulonate reductase, NADH‑dependent | |||||
| * | ? | NC_000913 | = 3638470 | 288 (1.940) | 4 (0.030) | 4/544 | NT | 1.4% | coding (829/1500 nt) | pitA | phosphate transporter, low‑affinity; tellurite importer |
| ? | NC_000913 | = 3638477 | 285 (1.990) | coding (836/1500 nt) | pitA | phosphate transporter, low‑affinity; tellurite importer | |||||
| * | ? | NC_000913 | = 3630847 | 294 (1.980) | 2 (0.010) | 3/554 | NT | 0.69% | intergenic (‑245/+121) | yhiI/yhiJ | putative membrane fusion protein (MFP) of efflux pump/DUF4049 family protein |
| ? | NC_000913 | = 3630867 | 286 (1.960) | intergenic (‑265/+101) | yhiI/yhiJ | putative membrane fusion protein (MFP) of efflux pump/DUF4049 family protein | |||||