| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2771960 | 165 (1.090) | 4 (0.030) | 4/548 | NT | 2.4% | intergenic (+345/+42) | yfjT/yfjU | CP4‑57 prophage; putative periplasmic protein/CP4‑57 prophage; conserved protein;Phage or Prophage Related |
| ? | NC_000913 | = 2771971 | 168 (1.140) | intergenic (+356/+31) | yfjT/yfjU | CP4‑57 prophage; putative periplasmic protein/CP4‑57 prophage; conserved protein;Phage or Prophage Related | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCGGCGGTCGGGGGTTTCTTTTTTCTCCTTAATCTCCAGAGGTAGGCCACGTACTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2771654‑2771960‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatcaggGAGCAATGTCACCTGATGCCTGCCTTGTCCTTGAATGTGATTGGCCATGTTGATATCCGCAGTATTCATTCATATCTTTTTAATTTTAATGAAAAAGTTAGTCCGTCTCATGGGTTTATCAAGAATGGTTGATCATATGAAACCATCGCTTAGACCAAAAAGTGATCAGGAGTTTTAACACAGCCTGCGCTCACAGCGGAGCTTACAGCCAAAAAAAGATAAATATATCTGAAAAAAACTGACCACTGCGCTCATCGTTCGAAAGTACGTGGCCTACCTCTGGAGATTAAGGAG < NC_000913/2771971‑2771678 ctgggGGTCGGGGTTTTCTTGTTTCTCCTGAATCGCCAGAGGTAGACCAGGTACTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCCGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGATCATTTTTTGGTCTAAGCTATGGTTTCATATGATCAACCATTCTTGATAAACCCAGGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAAGACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGG < 1:1129407/295‑1CCGGCGGGCGTGGGTTTCTTGTGTCTCCTTAATCTCCAGAGGTAGGCCACGTACTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGG < 1:1336532/300‑1 CGGTCGGGGGTTTCTTTTTTCTCCTTAATCTCCAGAGGTAGGCCACGTACTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCAT < 1:1076599/299‑1 GGTCGGGGGTTTCTTTTTTCTCCTTAATCTCCAGAGGTAGGCCACGTACTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCAAATTCAAGGACAAGGCAGGCATCA > 1:651214/1‑300 CTTTTTTCTCCTTAATCTCCAGAGGTAGGCCACGTACTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCA > 2:877496/1‑285 CTTTTTTCTCCTTAATCTCCAGAGGTAGGCCACGTACTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGAAT > 2:296360/1‑286 CTTAATCTCCAGAGGTAGGCCACGTACTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGGAGCAATGTCACCTGATGCC < 1:132655/300‑1 TAATCTCCAGAGGTAGGCCACGTACTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGGAGCAATGTCACCTGATGCCTG < 1:963567/300‑1 ATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCCTGCCTTGTCCTTGAATGTGATTGGCCATGTTGATATCCGCAGTATTCATTCATATCTTTTTAATTTTAATGAAAAAGTTAGTCCGTCTCATGGGTTTATCAAGAATGGTTGATCATATGAAACCATCGCTTAGACCAAAAAGTGATCAGGAGTTTTAACACAGCCTGCGCTCACAGCGGAGCTTACAGCCAAAAAAAGAgatcggaa > 1:1372376/1‑292 AAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCCTGCCTTGTCCTTGAATGTGATTGGCCATGTTGATATCCGCAGTATTCATTCATATCTTTTTAATTTTAATGAAAAAGTTAGTCCGTCTCATGGGTTTATCAAGAATGGTTGATCATATGAAACCATCGCTTAGACCAAAAAGTGATCAGGAGTTTTAACACAGCCTGCGCTCACAGCGGAGCTTACAGCCAAAAAAAG < 2:1163522/286‑1 CATCAGGGAGCAATGTCACCTGATGCCTGCCTTGTCCTTGAATGTGATTGGCCATGTTGATATCCGCAGTATTCATTCATATCTTTTTAATTTTAATGAAAAAGTTAGTCCGTCTCATGGGTTTATCAAGAATGGTTGATCATATGAAACCATCGCTTAGACCAAAAAGTGATCAGGAGTTTTAACACAGCCTGCGCTCACAGCGGAGCTTACAGCCAAAAAAAGATAAATATATCTGAAAAAAACTGACCACTGCGCTCATCGTTCGAAAGTACGTGGCCTACCT < 2:434421/286‑1 ATCAGGGAGCAATGTCACCTGATGCCTGCCTTGTCCTTGAATGTGATTGGCCATGTTGATATCCGCAGTATTCATTCATATCTTTTTAATTTTAATGAAAAAGTTAGTCCGTCTCATGGGTTTATCAAGAATGGTTGATCATATGAAACCATCGCTTAGACCAAAAAGTGATCAGGAGTTTTAACACAGCCTGCGCTCACAGCGGAGCTTACAGCCAAAAAAAGATAAATATATCTGAAAAAAACTGACCACTGCGCTCATCGTTCGACAGTACGTGGCCTACCTCTGGAGATTAAGGAG > 1:1413784/1‑300 TCAGGGAGCAATGTCACCTGATGCCTGCCTTGTCCTTGAATGTTATTGGCCATGTTGATATCCGCAGTATTCATTCATATCTTTTTAATTTTAATGAAAAAGTTAGTCCGTCTCATGGGTTTATCAAGAATGGTTGATCATATGAAACCATCGCTTAGACCAAAAAGTGATCAGGAGTTTTAACACAGCCTGCGCTCACAGCGGAGCTTACAGCCAAAAAAAGATAAATATATCTGAAAAAAACTGACCACTGCGCTCATCGTTCGAAAGTACGTGGCCTACCTCT < 2:1014877/286‑1 AGGGATCAATGTCACCTGATGCCTGTCTTGTCCTTGAATGTGATTGGCCTTGTTGATATCCGCAGTATTCATTCATATCTTTTTAATTTTAATGAAAAAGTTAGTCCGTCTCATGGGTTTATCAAGAATGGTTGATCATATGAAACCATCGCTTAGACCAAAAAGTGATCAGTAGTTTTAACACAGCCTGCGCTCACAGCGGAGCTTACAGCCAAAAAAAGATAAATATATCTGAAAAAAACTGACCACTGCGCTCATCGTTCGAAAGTACGTGGCCTACCTCTGG < 2:1172625/286‑1 GGGAGCAATGTCACCTGATGCCTGCCTTGTCCTTGAATGTGATTGGCCATGTTGATATCCGCAGTATTCATTCATATCTTTTTAATTTTAATGAAAAAGTTAGTCCGTCTCATGGGTTTATCAAGCATGGTTGATCATATGAAACCATCGCTTAGCCCAAAAAGTGATCAGGAGTTTTAACACAGCCTGCGCTCACAGCGGAGCTTACAGCCAAAAAAAGATAAATATATCTGAAACAAACTGACCACTGCGCTCATCGTTCGAAAGTCCGTGGCCTACCTCTGGA > 2:729041/1‑286 CCGGCGGTCGGGGGTTTCTTTTTTCTCCTTAATCTCCAGAGGTAGGCCACGTACTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2771654‑2771960‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatcaggGAGCAATGTCACCTGATGCCTGCCTTGTCCTTGAATGTGATTGGCCATGTTGATATCCGCAGTATTCATTCATATCTTTTTAATTTTAATGAAAAAGTTAGTCCGTCTCATGGGTTTATCAAGAATGGTTGATCATATGAAACCATCGCTTAGACCAAAAAGTGATCAGGAGTTTTAACACAGCCTGCGCTCACAGCGGAGCTTACAGCCAAAAAAAGATAAATATATCTGAAAAAAACTGACCACTGCGCTCATCGTTCGAAAGTACGTGGCCTACCTCTGGAGATTAAGGAG < NC_000913/2771971‑2771678 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |