New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? BX571857 980997 =NA (NA)23 (0.160) 20/118 NT NA noncoding (1/27 nt) Repeat flanking prophage phiSa4(476) Repeat flanking prophage phiSa4(476)
?BX571857 = 1025750 NA (NA)intergenic (+519/‑57) SAS0954/SAS0955 amidase/putative protease

Only 100 of 241 total aligned reads displayed.

AAACACGAGTGGAAAATATTTAAAGTTAAAGTGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGTAAAAAACATGTAATTCCTAAAAGTCAG  >  BX571857/1025654‑1025845
                                                                                                |                                                                                               
aaaCACGAGTGGAAAATATTTAAAGTTAAAGTGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTAcc                                                                                                 <  1:606283/97‑1 (MQ=255)
  acacGAGTGGAAAATATTTAAAGTTAAAGTGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCat                                                                                               >  2:1216950‑M2/1‑95 (MQ=255)
   cacGAGTGGAAAATATTTAAAGTTAAAGTGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCatt                                                                                              <  2:3035223‑M2/97‑4 (MQ=255)
   cacGAGTGGAAAATATTTAAAGTTAAAGTGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCatt                                                                                              <  1:1773980‑M2/97‑4 (MQ=255)
     cGAGTGGAAAATATTTAAAGTTAAAGTGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattag                                                                                            >  2:2453651‑M2/1‑92 (MQ=255)
      gAGTGGAAAATATTTAAAGTTAAAGTGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattagg                                                                                           >  2:1922818‑M2/1‑91 (MQ=255)
       aGTGGAAAATATTTAAAGTTAAAGTGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggt                                                                                          >  2:1669523‑M2/1‑90 (MQ=255)
         tGGAAAATATTTAAAGTTAAAGTGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgt                                                                                        <  2:2882684‑M2/97‑10 (MQ=255)
          ggAAAATATTTAAAGTTAAAGTGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgtt                                                                                       <  1:497747‑M2/97‑11 (MQ=255)
           gAAAATATTTAAAGTTAAAGTGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgtta                                                                                      <  1:1489743‑M2/97‑12 (MQ=255)
            aaaaTATTTAAAGTTAAAGTGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgttaa                                                                                     >  2:1490333‑M2/1‑85 (MQ=255)
            aaaaTATTTAAAGTTAAAGTGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgttaa                                                                                     <  1:947296‑M2/97‑13 (MQ=255)
             aaaTATTTAAAGTTAAAGTGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgttaat                                                                                    <  1:2284881‑M2/97‑14 (MQ=255)
             aaaTATTTAAAGTTAAAGTGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgttaat                                                                                    <  1:1423112‑M2/97‑14 (MQ=255)
              aaTATTTAAAGTTAAAGTGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgttaatg                                                                                   >  2:478586‑M2/1‑83 (MQ=255)
              aaTATTTAAAGTTAAAGTGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgttaatg                                                                                   >  1:2934609‑M2/1‑83 (MQ=255)
              aaTATTTAAAGTTAAAGTGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgttaatg                                                                                   <  1:2507092‑M2/97‑15 (MQ=255)
               atatTTAAAGTTAAAGTGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgttaatgt                                                                                  >  1:676463‑M2/1‑82 (MQ=255)
               atatTTAAAGTTAAAGTGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgttaatgt                                                                                  <  1:2541326‑M2/97‑16 (MQ=255)
                tatTTAAAGTTAAAGTGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgttaatgtg                                                                                 <  1:1613415‑M2/97‑17 (MQ=255)
                tatTTAAAGTTAAAGTGATAAAAACTTTGATATTACAACGTTTTTAAACGTTCGTGTACGTTTGAGAATGACCGTTTTACCattaggtgtgaatgtg                                                                                 <  1:3000306‑M2/97‑17 (MQ=255)
                 atTTAAAGTTAAAGTGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgttaatgtgt                                                                                <  1:3239887‑M2/97‑18 (MQ=255)
                  tttAAAGTTAAAGTGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgttaatgtgtc                                                                               <  1:2175855‑M2/97‑19 (MQ=255)
                    taaagttaaagtGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgttaatgtgtcat                                                                             <  2:2411839‑M2/97‑21 (MQ=255)
                      aagttaaagtGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgttaatgtgtcataa                                                                           >  1:2350696‑M2/1‑75 (MQ=255)
                       agttaaagtGATCAAAGCTTTTATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTAACattaggtgttaatgtgtcataat                                                                          >  2:2065599‑M2/1‑74 (MQ=255)
                       agttaaagtGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgttaatgtgtcataat                                                                          >  1:375841‑M2/1‑74 (MQ=255)
                        gttaaagtGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgttaatgtgtcataatg                                                                         <  1:3450665‑M2/97‑25 (MQ=255)
                         ttaaagtGATAAAATCTTTGATATTACGGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgttaatgtgtcataatga                                                                        >  1:1228927‑M2/1‑72 (MQ=255)
                          taaagtGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgttaatgtgtcataatgat                                                                       >  2:1903402‑M2/1‑71 (MQ=255)
                          taaagtGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgttaatgtgtcataatgat                                                                       <  1:1013358‑M2/97‑27 (MQ=255)
                              gtGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGt                                                                   <  1:3141218/97‑1 (MQ=255)
                              gtGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGt                                                                   >  2:2691224/1‑97 (MQ=255)
                               tGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTg                                                                  >  1:1732140/1‑97 (MQ=255)
                                gATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGa                                                                 >  2:2210212/1‑97 (MQ=255)
                                gATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGa                                                                 >  1:3367093/1‑97 (MQ=255)
                                gATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGa                                                                 <  2:30131/97‑1 (MQ=255)
                                 aTAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgttaatgtgtcataatgatacagata                                                                <  1:2051634‑M2/97‑34 (MQ=255)
                                 aTAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGAt                                                                <  2:114695/97‑1 (MQ=255)
                                  tAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTATGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGAtt                                                               >  1:5996/1‑97 (MQ=255)
                                        cTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTg                                                         <  1:190146/97‑1 (MQ=255)
                                           tGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAAt                                                      >  1:257193/1‑97 (MQ=255)
                                            gATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATg                                                     <  2:597656/97‑1 (MQ=255)
                                            gATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATg                                                     <  2:1574848/97‑1 (MQ=255)
                                            gATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATg                                                     <  2:2121656/97‑1 (MQ=255)
                                             atatTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATgg                                                    <  2:3093600/97‑1 (MQ=255)
                                               atTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAg                                                  <  1:1352933/97‑1 (MQ=255)
                                                ttACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGt                                                 >  1:2773371/1‑97 (MQ=255)
                                                 tACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTg                                                <  1:544827/97‑1 (MQ=255)
                                                 tACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTg                                                >  1:1665067/1‑97 (MQ=255)
                                                  aCAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTgg                                               >  1:2076765/1‑97 (MQ=255)
                                                   cAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgttaatgtgtcataatgatacagataacgccttaattacagtgt                                              >  1:1151498‑M2/1‑46 (MQ=255)
                                                   cAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgttaatgtgtcataatgatacagataacgccttaattacagtgt                                              >  2:2889958‑M2/1‑46 (MQ=255)
                                                   cAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCattaggtgttaatgtgtcataatgatacagataacgccttaattacagtgt                                              <  2:2113150‑M2/97‑52 (MQ=255)
                                                   cAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGa                                              >  1:2414495/1‑97 (MQ=255)
                                                      cGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACAt                                           <  1:2957371/97‑1 (MQ=255)
                                                      cGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACAt                                           <  2:3069664/97‑1 (MQ=255)
                                                       gTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACAtt                                          >  2:1279181/1‑97 (MQ=255)
                                                       gTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACAtt                                          >  1:8273/1‑97 (MQ=255)
                                                       gTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACAtt                                          <  2:271162/97‑1 (MQ=255)
                                                         ttttAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAg                                        <  2:2769689/97‑1 (MQ=255)
                                                          tttAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGt                                       >  2:398569/1‑97 (MQ=255)
                                                          tttAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGt                                       >  2:1594038/1‑97 (MQ=255)
                                                          tttAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGt                                       >  2:739035/1‑97 (MQ=255)
                                                           ttAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTg                                      <  2:1092265/97‑1 (MQ=255)
                                                            tAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACTATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTgg                                     <  1:807262/97‑1 (MQ=255)
                                                                 gTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATAtt                                <  2:1863689/97‑1 (MQ=255)
                                                                 gTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATAtt                                >  2:2974438/1‑97 (MQ=255)
                                                                   tCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTgg                              >  2:1712814/1‑97 (MQ=255)
                                                                   tCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTgg                              >  2:2760177/1‑97 (MQ=255)
                                                                    cGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGt                             >  2:823134/1‑97 (MQ=255)
                                                                    cGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGt                             <  2:3292603/97‑1 (MQ=255)
                                                                    cGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGt                             <  2:2508954/97‑1 (MQ=255)
                                                                     gtgtACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGTa                            <  2:2312619/97‑1 (MQ=255)
                                                                        tACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGTaaaa                         >  1:2295846/1‑97 (MQ=255)
                                                                        tACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGTaaaa                         <  1:1278269/97‑1 (MQ=255)
                                                                          cGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGTaaaaaa                       >  1:41459/1‑97 (MQ=255)
                                                                          cGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGTaaaaaa                       <  1:2812282/97‑1 (MQ=255)
                                                                           gTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGTAAAAAAc                      <  1:558642/97‑1 (MQ=255)
                                                                            tttGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGTAAAAAACa                     <  1:101529/97‑1 (MQ=255)
                                                                            tttGAGAATGACCGTTTTACCATTAGGTGTTATTCTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGTAAAAAACa                     <  2:1303732/97‑1 (MQ=255)
                                                                             ttGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGTAAAAAACAt                    <  1:200656/97‑1 (MQ=255)
                                                                             ttGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGTAAAAAACAt                    >  2:1405987/1‑97 (MQ=255)
                                                                              tGAGAATGGCCGTTTTACCattaggtgttaatgtgtcataatgatacagataacgccttaattacagtgttttcaaggtgttcagaatgtgttgcaa                   >  1:2134236‑M2/1‑19 (MQ=255)
                                                                              tGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGTAAAAAACATg                   >  1:1963987/1‑97 (MQ=255)
                                                                               gagaATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGTAAAAAACATGt                  <  2:2150629/97‑1 (MQ=255)
                                                                                  aaTGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGTAAAAAACATGTAAt               >  1:100904/1‑97 (MQ=255)
                                                                                   aTGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGTAAAAAACATGTAAtt              >  1:1122758/1‑97 (MQ=255)
                                                                                    tGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGTAAAAAACATGTAATTc             >  2:582939/1‑97 (MQ=255)
                                                                                     ggCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGTAAAAAACATGTAATTcc            <  2:1686077/97‑1 (MQ=255)
                                                                                     ggCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTAGACATTAGTGGATATTGGTAAAAAACATGTAATTcc            <  1:25001/97‑1 (MQ=255)
                                                                                      gCCGTTTTACCattaggtgttaatgtgtcataatgatacagataacgccttaattacagtgttttcaaggtgttcagaatgtgttgcaaggtaaaaa           <  2:2657370‑M2/97‑87 (MQ=255)
                                                                                       ccGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGTAAAAAACATGTAATTCCTa          <  1:167808/97‑1 (MQ=255)
                                                                                        cGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGTAAAAAACATGTAATTCCTaa         <  1:3120421/97‑1 (MQ=255)
                                                                                        cGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGTAAAAAACATGTAATTCCTaa         >  2:3327162/1‑97 (MQ=255)
                                                                                        cGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGTAAAAAACATGTAATTCCTaa         <  1:3168827/97‑1 (MQ=255)
                                                                                            ttACCattaggtgttaatgtgtcataatgatacagataacgccttaattacagtgttttcaaggtgttccgaatgtgttgcaaggtaaaaaagggca     <  2:3116002‑M2/97‑93 (MQ=255)
                                                                                             tACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGTAAAAAACATGTAATTCCTAAAAGTc    <  2:1507414/97‑1 (MQ=255)
                                                                                               ccATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGTAAAAAACATGTAATTCCTAAAAGTCAg  <  1:3127342/97‑1 (MQ=255)
                                                                                               ccATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGTAAAAAACATGTAATTCCTAAAAGTCAg  <  2:346755/97‑1 (MQ=255)
                                                                                                |                                                                                               
AAACACGAGTGGAAAATATTTAAAGTTAAAGTGATAAAAACTTTGATATTACAGCGTTTTTAAACGTTCGTGTACGTTTGAGAATGGCCGTTTTACCATTAGGTGTTAATGTGTCATAATGATAAGTGATTTTATTGAATGGAGTGGACATTAGTGGATATTGGTAAAAAACATGTAATTCCTAAAAGTCAG  >  BX571857/1025654‑1025845

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.