| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | = 596982 | 169 (0.950) | 20 (0.110) | 8/192 | 14.9 | 10.6% | coding (2577/2874 nt) | SAS0519 | putative surface anchored protein |
| ? | BX571857 | = 2700094 | 167 (0.940) | coding (2374/2718 nt) | SAS2516 | fibrinogen and keratin‑10 binding surface anchored protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATTCAGACTCGGATAGCGACTCAGACTCGGATAGCGATTCAGACTCAGATAGCGATTCAGACTCAGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BX571857/596914‑596982‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGAC < BX571857/2700094‑2699999 GATTCAGACTCAGACAGCGACTCAGACTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAG > 2:578052/1‑97 ctcaGATAGCGATTCAGACTCAGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGAC > 2:2660929/5‑97 GATAGCGATTCAGACTCAGACAGCGATTCAGACTCAGACAGCGACTCAGATTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCG < 2:1194774/97‑1 GCGATTCAGAATCAGATAGCGATTCAGACTCAGACAGC < 2:1154609/38‑1 gagTCAGACTCAGACAGCGATTCAGATTCAGATAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAG < 2:2387811/94‑1 GATTCAGACTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAG < 1:1366349/97‑1 TCAGGCTCAGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGCCAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATT < 2:1857865/97‑1 AGACTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCA < 1:2308642/97‑1 gctTCAGATAGCGATTCAGGCTCAGACAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAG < 2:2430754/94‑1 tTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGAt < 2:727325/96‑2 ATAGCGATTCGGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGAATCAGACAGCGATTCAGACACAGACAGCGACTCAGATTGAGACAGCGA > 2:189538/1‑97 AGCGATTCAGACTCAGACAGCGATTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCA < 2:2540523/69‑1 AGCGATTCAGACTCAGACAGCGATTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCA > 1:2540523/1‑69 GCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCCGAATCAGATAGCGATCCAGACTCAGACAGCGATTCAGATTCAGACAGCGACcc > 2:676820/1‑95 GATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGATTCA < 1:466831/42‑1 GATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGATTCA > 2:466831/1‑42 GATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGACTCAGACTCAGACAGCGACTCAGATTCAGACGGCGACCCAG > 2:1913584/1‑97 TCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACT > 1:1672546/1‑97 GACAGCGAGTCAGACTCAGACAGCGACTCAGACTCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCG < 2:1906173/97‑1 CAGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGAC < 1:1087951/97‑1 GATTCAGACTCGGATAGCGACTCAGACTCGGATAGCGATTCAGACTCAGATAGCGATTCAGACTCAGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BX571857/596914‑596982‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGACTCAGACTCAGACAGCGACTCAGAATCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGAC < BX571857/2700094‑2699999 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |