| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | 596989 = | 159 (0.890) | 10 (0.060) +GTCTGA |
4/180 | 16.9 | 6.1% | coding (2584/2874 nt) | SAS0519 | putative surface anchored protein |
| ? | BX571857 | 2700095 = | 168 (0.940) | coding (2373/2718 nt) | SAS2516 | fibrinogen and keratin‑10 binding surface anchored protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TATCTGAATCGGCATCACTTTCTGAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTGTCTGAATCTGAATCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < BX571857/597079‑596989‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCTGAATCGCTGTCTGAGTCTGAGTCGCTATCTGAATCTGAATCGCTGTCTGAGTCTGAATCGCTATCTGATTCTGAGTCGCTGTCTGA > BX571857/2700095‑2700184 |||||| TATCTGAATCGGCATCACTTTCTGAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTGTCTGAATCTGAATCGCTGTCcgg > 2:28665/1‑94 TCTGAATCGGCATCACTTTCTGAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTGTCTGAATCTGAATCGCTGTCCGAAT > 2:1298936/1‑97 TCTGAATCGGCATCACTTTCTGAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTATCTGAGTCTGAGTCGCTGTCTGAAT > 2:283199/1‑97 TGAATCGGCATCACTTTCTGAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTATCTGAATCTGAATCGCGGTCCGAATCg > 2:916815/1‑96 AATCGGCGTCACTTTCTGAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTATCTGAGTCTGAATCGCTGTCTGAATCTGA < 2:1494586/97‑1 TCGGCATCACTTTCTGAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTGTCTGAATCTGAATCGCTGTCTGAGTCTGAgt > 2:2535962/1‑95 GAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTGTCTGAATCTGAGTCGCTGTCTGAATCTGAATCGCTATCTGAGTCTG > 1:1887639/1‑97 GAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTGTCTGAGTCTGAGTCGCTGTCTGAGTCTGAGTCGCTGTCGCTGTCTGAGTCGC > 2:810477/1‑97 CTGAATCGCTGTCTGAATCTGAATCGCTGTCTGAG > 1:1157073/1‑35 CTGAATCGCTGTCTGAATCTGAATCGCTGTCTGAG < 2:1157073/35‑1 TGTCTGAGTCTGTGTCGCTGTCTGAGTCTGAGTCGCTATCTGAATCTGTGTCGCTGTCTGAGTCTGAGTCGCTATCTGAGTCTGAGTCGCTGTCTGA < 2:2101563/97‑1 |||||| TATCTGAATCGGCATCACTTTCTGAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTGTCTGAATCTGAATCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < BX571857/597079‑596989‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCTGAATCGCTGTCTGAGTCTGAGTCGCTATCTGAATCTGAATCGCTGTCTGAGTCTGAATCGCTATCTGATTCTGAGTCGCTGTCTGA > BX571857/2700095‑2700184 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |