| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | 596995 = | 161 (0.900) | 13 (0.070) +G |
5/190 | 16.6 | 7.6% | coding (2590/2874 nt) | SAS0519 | putative surface anchored protein |
| ? | BX571857 | 2700102 = | 158 (0.890) | coding (2366/2718 nt) | SAS2516 | fibrinogen and keratin‑10 binding surface anchored protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATCGCTATCTGTATCTGAATCGGCATCACTTTCTGAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTGTCTGAATCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < BX571857/597090‑596995‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCGCTGTCTGAGTCTGAGTCGCTATCTGAATCTGAATCGCTGTCTGAGTCTGAATCGCTATCTGATTCTGAGTCGCTGTCTGAGTCTGAGTCGCTG > BX571857/2700102‑2700197 | ATCGCTATCTGTATCTGAATCGGCATCACTTTCTGAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTGTCTGAATCTGAG > 1:958246/1‑97 GCTATCTGTATCTGAATCGGCATCACTTTCTGAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTGTCTGAATCTGAGTCG > 2:223128/1‑97 TCTGAATCGGCATCACTTTCTGAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTATCTGAGTCTGAGTCGCTGTCTGAat > 2:283199/1‑95 TCGGCATCACTTTCTGAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTGTCTGAATCTGAATCGCTGTCTGAGTCTGAGT > 2:2535962/1‑97 ATCACTTTCTGAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTGTCTGAGTCTGAGTCGCTGTCCGAGTCTGAGTCGGTA > 2:1514925/1‑97 GAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTGTCTGAATCTGAGTCGCTGTCTGAATCTGAATCGCTATCTGAGTCTG > 1:1887639/1‑97 TGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTATCTGAATCTGAGTCGCTGTCCGAGTCTGAGTCGCAATCGGAATCTGAGTCG > 1:989458/1‑97 tTCGCAGTCTGAGTCTGAGTCTCTGTCTGAATCTGAGTCGCTGTCTGAGTCTGAGTCGCTGTCTGAATCTGAATCGCTGTCTGAGTCTGAATCGCTA < 2:1802691/96‑1 GTCGCTGTCTGAATCTGAGTCGCTGTCTGAGTCTGAGTCGCTGTCTGAATCTGAATCGCTGTCCGAGTCTGAGTCGCTGTCTGAATCTGAGTCGCTG < 2:1463059/97‑1 TGTCTGAGTCTGTGTCGCTGTCTGAGTCTGAGTCGCTATCTGAATCTGTGTCGCTGTCTGAGTCTGAGTCGCTATCTGAGTCTGAGTCGCTGTCTGA < 2:2101563/97‑1 tATCTGAGTCGCTGTCTGAGTCTGAGTCGCTATCTGAATCTGAATCGCTGTCTGAGTCTGAATCGCTATCTGATTCTGAGTCGCTGTCTGAGTCTGA < 1:300734/96‑1 tATCTGAGTCGCTGTCTGAGTCTGAGTCGCTATCTGAATCTGAATCGCTGTCTGAGTCTGAATCGCTATCTGATTCTGAGTCGCTGTCTGAGTCTGA < 2:2612595/96‑1 CTGAGTCGCTGTCTGAGTCTGAGTCGCTGTCTGAGTCTGAGTCGCTGTCTGAGTCTGAATCGCTATCTGAGTCTGAGTCGCTGTCTGAGTCTGAatc < 2:578052/97‑4 TGAGTCGCTGTCTGAGTCTGAGTCGCTATCTGAATCTGAATCGCTGTCTGAGTCTGAATCGCTATCTGATTCTGAGTCGCTGTCTGAGTCTGAGTCG < 2:645723/97‑1 GTCGCTGTCTGAGTCTGAGTCGCTATCTGAATCTGAATCGCTGTCTGAGTCTGAATCGCTATCTGATTCTGAGTCGCTGTCTGAGTCTGAGTCGCTG < 2:2524371/97‑1 | ATCGCTATCTGTATCTGAATCGGCATCACTTTCTGAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCCGAATCTGAGTCGCTGTCTGAATCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < BX571857/597090‑596995‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCGCTGTCTGAGTCTGAGTCGCTATCTGAATCTGAATCGCTGTCTGAGTCTGAATCGCTATCTGATTCTGAGTCGCTGTCTGAGTCTGAGTCGCTG > BX571857/2700102‑2700197 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |