| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | = 2027394 | 124 (0.700) | 3 (0.020) | 3/160 | 16.7 | 2.3% | intergenic (‑390/+122) | SAS1866/SAS1867 | putative exported protein/amidase (fragment) |
| ? | BX571857 | 2028235 = | 150 (1.010) | intergenic (‑384/+267) | SAS1867/SAS1868 | amidase (fragment)/staphylokinase precursor | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGGCGCTCCTTGAAAACGCCCAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAAATATATAGCACAAAAAAAACTAGCCCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BX571857/2027284‑2027394‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaactagcccgaaAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTGAATACGTCTAGAAAGATTATAACATAAAAAAATAGGCAAGTACCGAAGTACCTGCCTA > BX571857/2028235‑2028330 AGGCGCTCCTTGAAAACGCCCAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAAATATATAGCACAAAA < 1:1950917/97‑1 GCTCCTTGAAAACGCCCAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAAATATATAGCACAAAAAAAA < 2:2535550/97‑1 CTCCTTGAAAACGCCCAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAAATATATAGCACAAAAAAAAC < 1:1937046/97‑1 CTCCTTGAAAACGCCCAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAAATATATAGCACAAAAAAAAC > 2:1323995/1‑97 CTCCTTGAAAACGCCCAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAAATATATAGCACAAAAAAAAC < 1:2518476/97‑1 TTGAAAACGCCCAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAAATATATAGCACAAAAAAAACTAGC > 1:184634/1‑97 TGAAAACGCCCAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAAATATATAGCCCAAAAAAAACTAGCC > 1:864181/1‑97 AAAACGCCCAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAAATATATAGCACAAAAAAAACTAGCCCG < 2:803635/97‑1 AAAACGCCCAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAAATATATAGCACAAAAAAAACTAGCCCG > 2:699146/1‑97 AACGCCCAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAAATATATAGCACAAAAAAAACTAGCCCGAA > 1:589433/1‑97 GTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAAATATATAGCACAAAAAAAACTAGCCCGAAAGCTAGCTAa > 2:565128/1‑96 TACTATTGCATTATCTAATTTTATTTAATTAAAACAAATATATAGCACAAAAAAAACTAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACG > 2:527378/1‑97 ATTGCATTATCTAATTTTATTTAATTAAAACAAATATATAGCACAAAAAAAACTAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCT < 1:527378/97‑1 AAAACACTAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTACATACGTCTAGAAAGATTATAACATAAAAAAAAAGGCAAGTAC > 2:1930125/1‑97 AAAAAACTAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTGAATACGTCTAGAAAGATTATAACATAAAAAAATAGGCAAGTAC > 1:40510/1‑97 AAAAAACTAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTGAATACGTCTAGAAAGATTATAACATAAAAAAATAGGCAAGTAC > 2:1175095/1‑97 AAAAACTAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTGAATACGTCTAGAAAGATTATAACATAAAAAAATAGGCAAGTACC < 1:565128/97‑1 AAACTAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTGAATACGTCTAGAAAGATTATAACATAAAAAAATAGGCAAGTACCGA < 2:1419816/97‑1 AACTAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTGAATACGTCTAGAAAGATTATAACATAAAAAAATAGGCAAGTACCGAA < 2:1292199/97‑1 AACTAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTGAATACGTCTAGAAAGATTATAACATAAAAAAATAGGCAAGTACCGAA > 2:666252/1‑97 AACTAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTGAATACGTCTAGAAAGATTATAACATAAAAAAATAGGCAAGTACCGAA < 1:2668477/97‑1 ACTAGCCCGAAAGCTAGCTATAACCTACAATCTAAAAAGACGTCCTTTGAAGACGTCTAGAAAGATTATAACATAAAAAAATAGGCAAGTACCGAAG < 2:2072167/97‑1 CTAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTGAATACGTCTAGAAAGATTATAACATAAAAAAATAGGCAAGTACCGAAGT < 2:2684258/97‑1 CTAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTGAATACGTCTAGAAAGATTATAACATAAAAAAATAGGCAAGTACCGAAGT < 2:618092/97‑1 CTAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTGAATACGTCTAGAAAGATTATAACATAAAAAAATAGGCAAGTACCGAAGT < 1:2433101/97‑1 TAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTGAATACGTCTAGAAAGATTATAACATAAAAAAATAGGCAAGTACCGAAGTA < 2:1626136/97‑1 TAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTGAATACGTCTAGAAAGATTATAACATAAAAAAATAGGCAAGTACCGAAGTA < 1:126827/97‑1 TAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTGAATACGTCTAGAAAGATTATAACATAAAAAAATAGGCAAGTACCGAAGTA < 2:614109/97‑1 TAGCCCGAAAGCTAGCTATAACAAACAAACTAAAAAGACGTCCTTTGAATACGTCTAGAAAGATTATAACATAAAAAAATAGGCAAGTACCGAAGTA < 2:2675811/97‑1 CCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTGAATACGTCTAGAAAGATTATAACATAAAAAAATAGGCAAGTACCGAAGTACCTG > 1:2530382/1‑97 CGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTGAATACGTCTAGAAAGATTATAACATAAAAAAATAGGCAAGTACCGAAGTACCTGC < 2:419803/97‑1 GAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTGAATACGTCTAGAAAGATTATAACATAAAAAAATAGGCAAGTACCGAAGTACCTGCC > 1:955725/1‑97 AAAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTGAATACGTCTAGAAAGATTATAACATAAAAAAATAGGCAAGTACCGAAGTACCTGCCT < 2:381526/97‑1 AAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTGAATACGTCTAGAAAGATTATAACATAAAAAAATAGGCAAGTACCGAAGTACCTGCCTA > 1:2114940/1‑97 AAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTGAATACGTCTAGAAAGATTATAACATAAAAAAATAGGCAAGTACCGAAGTACCTGCCTA > 1:1821269/1‑97 AGGCGCTCCTTGAAAACGCCCAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAAATATATAGCACAAAAAAAACTAGCCCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BX571857/2027284‑2027394‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaactagcccgaaAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTGAATACGTCTAGAAAGATTATAACATAAAAAAATAGGCAAGTACCGAAGTACCTGCCTA > BX571857/2028235‑2028330 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |