| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571858 | 1 = | 0 (0.000) | 35 (0.920) | 28/170 | NT | 100% | intergenic (–/‑11) | –/pSAS01 | –/putative ABC transporter ATP binding protein |
| ? | BX571858 | = 20651 | 0 (0.000) | intergenic (+5/–) | pSAS24/– | putative exported protein/– | |||||
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAACATTTTAGACGGATGTAACTTTAATTTTGAAAAAGGAAA > BX571858/1‑94 | ctacaaaagaatatgtgaaagtaaatcataaagggaaatatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGa > 2:1396700‑M1/93‑97 (MQ=255)ctacaaaagaatatgtgaaagtaaatcataaagggaaatatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGa < 2:2108718‑M1/5‑1 (MQ=255)ctacaaaagaatatgtgaaagtaaatcataaagggaaatatgtgcgctcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGa < 2:1548549‑M1/5‑1 (MQ=255) aaagaatatgtgaaagtaaatcataaagggaaatatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGAt > 1:708858‑M1/88‑97 (MQ=255) aagaatatgtgaaagtaaatcataaagggaaatatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATa > 2:1419858‑M1/87‑97 (MQ=255) taagtgaaagtaaatcataaagggaaatatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGAt > 2:1368465‑M1/82‑97 (MQ=255) atgtgaaagtaaatcataaagggaaatatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATa > 1:2060477‑M1/81‑97 (MQ=255) tgtgaaagtaaatcataaagggaaatatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATaa < 1:1418338‑M1/18‑1 (MQ=255) tgtgaaagtaaatcataaagggaaatatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATaa < 1:1418374‑M1/18‑1 (MQ=255) aaagtaaatcataaagggaaatatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACt < 1:2058790‑M1/22‑1 (MQ=255) aatcataaagggaaatatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGaaaa > 2:90984‑M1/70‑97 (MQ=255) aatcataaagggaaatatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGaaaa > 2:871740‑M1/70‑97 (MQ=255) tcataaagggaaatatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATg < 1:1324600‑M1/30‑1 (MQ=255) ataaagggaaatatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGtt > 2:1575372‑M1/66‑97 (MQ=255) aagggaaatatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGttttt < 1:1125551‑M1/35‑1 (MQ=255) agggaaatatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTg < 1:942902‑M1/36‑1 (MQ=255) gggaaatatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGt < 2:931177‑M1/37‑1 (MQ=255) gggaaatatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGt < 2:178467‑M1/37‑1 (MQ=255) atatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTaaaaa > 2:2123348‑M1/56‑97 (MQ=255) tatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTaaaaaa < 1:2126323‑M1/43‑1 (MQ=255) tatgtgcgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTaaaaaa < 2:1545381‑M1/43‑1 (MQ=255) cgttcgatagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGtaa < 1:691300‑M1/49‑1 (MQ=255) atagaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATaaaaa > 1:631877‑M1/43‑97 (MQ=255) taggatacactacaaaagatattcctagcttattaaaatgaGGTGACCTATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAAc > 2:11809‑M1/42‑97 (MQ=255) gaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAACAt > 1:1149369‑M1/40‑97 (MQ=255) gaatacattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAACAt > 1:47407‑M1/40‑97 (MQ=255) acattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAACATTTTa < 2:77857‑M1/62‑1 (MQ=255) cattacaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAACATTTTAg > 1:934542‑M1/35‑97 (MQ=255) acaaaagatattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAACATTTTAGACgg < 2:15408‑M1/67‑1 (MQ=255) atattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAACATTTTAGACGGATGTAAc < 2:1034149‑M1/74‑1 (MQ=255) atattcctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAACATTTTAGACGGATGTAAc > 1:1816516‑M1/24‑97 (MQ=255) cctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAACATTTTAGACGGATGTAACTTTaa > 2:1418374‑M1/19‑97 (MQ=255) cctagctttttaaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAACATTTTAGACGGATGTAACTTTaa > 2:1418338‑M1/19‑97 (MQ=255) tttaaaatgaGGTGACCGATAGTGAAAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAACATTTTAGCCGGATGTAACTTTAATTTTGaaa < 2:27674‑M1/87‑1 (MQ=255) ttaaagtgaGGTGACCGATAGTGAGAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAACATTTTAGACGGATGTAACTTTAATTTTGaaaa > 1:1325500‑M1/10‑97 (MQ=255) taaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAACATTTTAGACGGATGTAACTTTAATTTTGaaaaa > 2:1503228‑M1/9‑97 (MQ=255) aaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAACATTTTAGACGGATGTAACTTTAATTTTGAAAAAg < 1:627871‑M1/90‑1 (MQ=255) aaaatgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAACATTTTAGACGGATGTAACTTTAATTTTGAAAAAg < 1:2014126‑M1/90‑1 (MQ=255) tgaGGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAACATTTTAGACGGATGTAACTTTAATTTTGAAAAAGGaaa > 2:975437‑M1/4‑97 (MQ=255) | ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGACCGATAGTGATAAAACTTGAAAATGTTTTTGTAAAAAAAGGTAATAAAAACATTTTAGACGGATGTAACTTTAATTTTGAAAAAGGAAA > BX571858/1‑94 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |