| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | BX571857 | 1,332,856 | 30 bp→TCGGTGGTCGCCGTATCATTAAAAAAAAAA | 15.8% | coding (185‑214/1239 nt) | SAS1239 → | conserved hypothetical protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | = 1332855 | 187 (0.670) | 24 (0.130) +TCGGTGGTCGCCGTATCATTAAAAAAAAAA |
19/112 | NT | 15.8% | coding (184/1239 nt) | SAS1239 | conserved hypothetical protein |
| ? | BX571857 | 1332886 = | 208 (0.750) | coding (215/1239 nt) | SAS1239 | conserved hypothetical protein | |||||
TCTACAATGGAGGAATTATCATCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BX571857/1332768‑1332855‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGATGTAGTCATCACGAATGATGAATT > BX571857/1332886‑1332946 |||||||||||||||||||||||||||||| TCTACAATGGAGGAATTATCATCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCGCGGTGGTt > 2:4114157/1‑96 CAATGGAGGAATTATCATCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCGCGGTGATCGCgg > 2:2111249/1‑95 GAATTATCATCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTA > 2:3912675/1‑97 TCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGTCGTATCATTAAAAAAAAAA > 2:192797/1‑97 CTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAA > 2:4531346/1‑97 TTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCGCGGAGGTCGCGGTGTCATAAATAAAAAGAAAG > 2:449648/1‑97 AGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAAct > 2:862377/1‑95 AGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAAAAAaa > 2:439895/1‑95 AGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCGCGGAGGTCGCGGTGGCATTGGAAAAAAGAAAGAAATT > 2:4459621/1‑97 GAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCGCGGTGGTCGCCGTAGCATTAAAAAAAAAGAAGAAATTC > 2:970295/1‑97 TTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCGCGGTGGTCGCGGTGGCATAGAAAAAAAGGAAGAAATTCAAGCA > 2:1322049/1‑97 ACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATAAAAGCCTTCATT > 2:2787821/1‑97 TTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGCAGTTAGTGA > 2:1690928/1‑97 TGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTAGGTGGTCGCCGTATCATTAAAAAAAAAGAAGAAATTCAAGCATTTATTGAG > 2:3581847/1‑97 TGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTGGCATTAAAAAAAAAAAAGAAATTCAAGCATTTATTGAGTTCAA > 2:2933387/1‑97 GTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAGGAAGAAATTCAAGCATTTATTGAGCTCAAA > 2:4134514/1‑97 GGGTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATACAAGCATGTATTGAGTTCAAAGAT > 2:1155957/1‑97 GTCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTGTCATTGGAAAAAAGGAAGAAATTCAAGCATTTATTGAGTTCAAAGATAT > 2:1783782/1‑97 TCAAATTACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGCATTTATTGAGTTCAAAGATATT > 2:4399861/1‑97 TACTCAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGATGTA > 2:4576975/1‑97 CAAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGAAGAAGTCA > 2:84324/1‑97 AAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAACAAATACAAGCATTTATTGAGCTCAAAGATACTGAAGTAGCCAT > 2:2353837/1‑97 AAAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTAGCATTAAAAAAAAAAAAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGATGTAGTCAT > 2:2354566/1‑97 AAACAGAGATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGCATTTATTGAGTTCAGAGATATTGAAGAAGTCATC > 2:4502153/1‑97 GATCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAGAAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGATGTAGTCATCACGAATG > 2:3078767/1‑97 CGTGTAGATCTCGGTGGTCGCCGTGTCATTGAAAAAAAGGAAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGATGTAGTCATCACGAATGATG > 2:4641143/1‑97 GTAGATCGCGGTGGTCGCCGTGGCAAAAAAAAAAAGGAAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGATGTAGTCATCACGAATGATGAAT > 2:1578796/1‑97 TAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGATGTAGTCATCACGAATGATGAATT > 2:4540100/1‑97 TAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGATGTAGTCATCACGAATGATGAATT > 2:3899394/1‑97 TAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGAGGTAGTCATCACGAATGATGAATT > 2:4243905/1‑97 |||||||||||||||||||||||||||||| TCTACAATGGAGGAATTATCATCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTACTCAAAACAGAGATCGTGTAGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BX571857/1332768‑1332855‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGAAATTCAAGCATTTATTGAGTTCAAAGATATTGATGTAGTCATCACGAATGATGAATT > BX571857/1332886‑1332946 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |