New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5506609 =	56 (0.860)	11 (0.220)	10/208	4.5	21.4%	intergenic (+20/‑179)	PP_4839/cycA	iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease
	?	NC_002947	5506680 =	37 (0.730)					intergenic (+91/‑108)	PP_4839/cycA	iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease
Rejected: Coverage evenness skew score above cutoff.

CTGGAAGGCGGCAGTG‑GCCGTGATGCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTA  >  NC_002947/5506460‑5506755                                                                                                                                                       |                                                                                                                                                     cTGGAAGGCGGCAGTG‑GCCTTGTTGCTGGGGCTGGGGGTGTTGTTGCCGCTGGTGGGGGTGTCGATGGTGGTGGTGTGGGGTGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTg                                                                                                                                                      <  1:514946/150‑1 (MQ=255)   ggAAGGGGGCAGTGCGCCG‑GTTGTTCGGGGTGGGGGTGATGTTCCCGCTGGTGGGGGTGCTGTTGGTGGTCATGCGGCGGTTGCATCGTGTGTTGGTGAGGCGCCGCCGGGTCTTGCCCTGCGCTTGTGCCTTTTGTTGTCTGTGCCGGc                                                                                                                                                    <  2:263813/150‑1 (MQ=255)       ggcggcAGTG‑GCCGTGATGCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCctct                                                                                                                                                <  2:885014/150‑1 (MQ=255)       ggcggcAGTG‑GCCGTGATGCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCctct                                                                                                                                                <  1:1327562/150‑1 (MQ=255)         cggcAGTG‑GCCGTGATGCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTc                                                                                                                                              <  1:930988/150‑1 (MQ=255)             aGTG‑GCCGTGATGCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCgg                                                                                                                                          <  2:1613639/150‑1 (MQ=255)             aGTG‑GCCGTGATGCTGGTGCTGGGGGTGATGTTCCCGCCGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCgg                                                                                                                                          <  1:1233034/150‑1 (MQ=255)                       gATGCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCg                                                                                                                                 <  1:430285/150‑1 (MQ=255)                        ctggtgctgccggGGGGGATGTTCACGTTGGTGGGGGTGTCAATGGTGGTTCAGGGGGCGTTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGc                                                                                                                                <  1:1288697/143‑1 (MQ=37)                        aTGCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGc                                                                                                                                <  2:108414/150‑1 (MQ=255)                         ggctggtgctggGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTTTACCCGcg                                                                                                                               <  2:897938/149‑2 (MQ=255)                           ctggtgctggGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTTTACCCGcgaa                                                                                                                             <  1:942720/150‑4 (MQ=255)                             ggtgctggGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAAcc                                                                                                                                   >  2:1043890/1‑142 (MQ=255)                             ggtgctggGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAAcc                                                                                                                                   <  1:1043890/142‑1 (MQ=255)                              gtgctggGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTAc                                                                                                                          <  2:845175/150‑1 (MQ=255)                              gtgctggGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCACCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTTTACCCGcgaagag                                                                                                                          <  2:676829/150‑7 (MQ=255)                                 ctggGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑g                                                                                                                      <  2:1027144/150‑1 (MQ=255)                                    ggggTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTAcaacgcg                                                                                                                    >  1:1224274/1‑144 (MQ=255)                                      ggTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGAcc                                                                                                                <  2:795973/150‑1 (MQ=255)                                           tGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGtt                                                                                                           <  1:1488327/150‑1 (MQ=255)                                           tGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGtt                                                                                                           <  2:554095/150‑1 (MQ=255)                                              tCCCGCTGGTGGGGGTGTCGACGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTa                                                                                                        <  2:1059666/150‑1 (MQ=255)                                               cccGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGc                                                                                                                                                    <  1:1056018/107‑1 (MQ=255)                                               cccGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGc                                                                                                                                                    >  2:1056018/1‑107 (MQ=255)                                                ccGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGtt                                                                                                           <  1:24068/145‑1 (MQ=255)                                                ccGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGtt                                                                                                           >  2:24068/1‑145 (MQ=255)                                                   cTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGGGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGCGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACGCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGc                                                                                                   <  1:702972/150‑1 (MQ=255)                                                     ggtggGGGTGTCGGTGGTGGTTCTGGGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCGTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGGGGCCGTGGTAGGAGCgg                                                                                                 <  2:18107/150‑1 (MQ=38)                                                     ggtggGGGTGGCGAGGGTGGTGATGTGGGGGGTGGGTAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCgg                                                                                                 <  2:739710/150‑1 (MQ=255)                                                         ggggTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAAcc                                                                                                                                   >  2:91310/1‑114 (MQ=255)                                                         ggggTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAAcc                                                                                                                                   <  1:91310/114‑1 (MQ=255)                                                             tgtCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAAc                                                                                                                                    <  1:1358148/109‑1 (MQ=255)                                                             tgtCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAAc                                                                                                                                    >  2:1358148/1‑109 (MQ=255)                                                               tCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCcgc                                                                                       >  2:210116/1‑150 (MQ=255)                                                               tCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCcgc                                                                                       <  2:1569613/150‑1 (MQ=255)                                                               tCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCcgc                                                                                       <  1:564572/150‑1 (MQ=255)                                                                 gATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGa                                                                                     <  2:1434473/150‑1 (MQ=255)                                                                  aTGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGaa                                                                                    <  1:1025270/150‑1 (MQ=17)                                                                    ggtggtGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTa                                                                                                        >  2:1478975/1‑128 (MQ=255)                                                                    ggtggtGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTa                                                                                                        <  1:1478975/128‑1 (MQ=255)                                                                                            tttGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAg                                                          >  2:1002667/1‑150 (MQ=255)                                                                                               ggtggtGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTACCGGCCTCTTcgc                                                                                                                                            <  2:1134842/67‑1 (MQ=38)                                                                                               ggtggtGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTACCGGCCTCTTcgc                                                                                                                                            >  1:1134842/1‑67 (MQ=38)                                                                                                               cgGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGAt                                       <  1:210116/150‑1 (MQ=255)                                                                                                                gggTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTaaa                                                                                                                                     >  1:508526/1‑57 (MQ=255)                                                                                                                gggTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTaaa                                                                                                                                     <  2:508526/57‑1 (MQ=255)                                                                                                                gggTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATc                                      >  1:1097458/1‑150 (MQ=255)                                                                                                                   tCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCTCGTTGTAGGAGCGGGTTTACCCGCGAaga                                                                                  <  2:1295718/103‑1 (MQ=255)                                                                                                                   tCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCTCGTTGTAGGAGCGGGTTTACCCGCGAaga                                                                                  >  1:1295718/1‑103 (MQ=255)                                                                                                                          cAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAaga                                                                                  >  1:128736/1‑96 (MQ=255)                                                                                                                          cAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAaga                                                                                  <  2:128736/96‑1 (MQ=255)                                                                                                                                    gCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGaa                  >  1:502680/1‑150 (MQ=255)                                                                                                                                    gCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGaa                  <  2:1097458/150‑1 (MQ=255)                                                                                                                                       ttGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCa                                               >  2:501286/1‑118 (MQ=255)                                                                                                                                       ttGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCa                                               <  1:501286/118‑1 (MQ=255)                                                                                                                                                    gCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTtagccta  <  1:1002667/150‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                     CTGGAAGGCGGCAGTG‑GCCGTGATGCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTA  >  NC_002947/5506460‑5506755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.