| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5506609 = | 56 (0.860) | 11 (0.220) | 10/208 | 4.5 | 21.4% | intergenic (+20/‑179) | PP_4839/cycA | iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease |
| ? | NC_002947 | 5506680 = | 37 (0.730) | intergenic (+91/‑108) | PP_4839/cycA | iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
TTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCAC > NC_002947/5506550‑5506826 | tttGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAg > 2:1002667/1‑150 (MQ=255) cgGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGAt < 1:210116/150‑1 (MQ=255) gggTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATc > 1:1097458/1‑150 (MQ=255) gCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGaa > 1:502680/1‑150 (MQ=255) gCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGaa < 2:1097458/150‑1 (MQ=255) ttGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCa > 2:501286/1‑118 (MQ=255) ttGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCa < 1:501286/118‑1 (MQ=255) gCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTtagccta < 1:1002667/150‑1 (MQ=255) ctctTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGc > 1:1204553/1‑150 (MQ=255) ctctTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGACGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCggg > 1:1392838/1‑149 (MQ=255) ttCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTtag < 1:123018/137‑1 (MQ=255) ttCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTtag > 2:123018/1‑137 (MQ=255) ttCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTAc > 1:761084/1‑150 (MQ=255) ttCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTAc > 1:761232/1‑150 (MQ=255) cgGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACctct < 2:1204553/150‑1 (MQ=255) ggTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGa < 1:354960/150‑1 (MQ=255) ggTAAACCAGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCAGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCTGGCTACCTCTGa > 2:614515/1‑150 (MQ=255) tAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGA‑CAGGTTCAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACa > 2:1435976/1‑150 (MQ=255) cccGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACaagaa > 2:1543900/1‑150 (MQ=255) cccGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACaagaa < 1:1543900/150‑1 (MQ=255) ccGCTCCTACGAGGGACCGCGTTGTAGGAGCGAGTATACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACaagaag > 1:384224/1‑150 (MQ=255) gCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCCGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGAc > 1:1175192/1‑150 (MQ=255) tCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTg > 2:823309/1‑150 (MQ=255) tCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCAGGCTACCTCTGACAAGAAGACTg > 1:1300748/1‑150 (MQ=255) cTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCa > 2:1538390/1‑150 (MQ=255) tACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTgaga > 1:504111/1‑147 (MQ=255) tACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTgaga > 1:1308112/1‑147 (MQ=255) tACGAGGGACCGCGTTGTAGGAGCAGACTTACACGCACAGTGGTCCCCAACACG‑GAAATTCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGACCGCGCGTGTTAGCCTCGCCGGCTACCTCTGACAAGAAGACTGCAg < 2:761084/150‑1 (MQ=255) tACGAGGGACCGCGTTGTAGGAGAGGGTTTCCTCGGGACGTGG‑CAGGTGTGTGCGAAATGCTTGGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAATACTGCAg < 2:761232/150‑1 (MQ=255) aGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTa > 1:1471670/1‑150 (MQ=255) gggACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGcccat > 2:1320909/1‑147 (MQ=255) ccGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGGGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACg > 2:697980/1‑150 (MQ=255) cgcgTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGcc > 2:677362/1‑84 (MQ=255) cgcgTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGcc < 1:677362/84‑1 (MQ=255) cgcgTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGc < 2:1471670/150‑1 (MQ=255) gcgTTGTAGGAGCGGGTTTACACGCGAAGAGG‑CCGGTACAAGCGAAATGCTGAGGCGAAAATGCAGAGTAGATCTGTCGCGCCCCGATCTGGAACGCGCGGGTAAGCCTAGCCGGCTACCTCTTACAAGAAGACTGCGGCCTATCACGCa > 2:91301/1‑150 (MQ=255) gTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTCGACGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCaaa > 1:427377/1‑150 (MQ=255) tcgTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAAc < 1:817362/148‑1 (MQ=255) tAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGTGGGAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACATCTGACAAGAAGACTGCAGCCTATGACGCAAACCTc > 1:1345445/1‑150 (MQ=255) tAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTc > 1:996002/1‑150 (MQ=255) gCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGAAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCa > 1:68067/1‑150 (MQ=255) gggTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATa < 1:915442/150‑1 (MQ=255) ggTTTACCCGCGAAGAGG‑CCGGTACAGGCCCAACGCATAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAg < 2:384224/150‑1 (MQ=255) gTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGc > 2:254920/1‑150 (MQ=255) gTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGc > 2:856881/1‑150 (MQ=255) ccGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGa > 1:347499/1‑150 (MQ=255) aaGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGAAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAAc < 2:68067/150‑1 (MQ=255) g‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCAc > 2:220394/1‑150 (MQ=255) g‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCAc < 2:1300748/150‑1 (MQ=255) | TTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCAC > NC_002947/5506550‑5506826 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |