| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6009165 = | 20 (0.460) | 14 (0.430) | 10/200 | 2.4 | 62.2% | intergenic (+6/+76) | norM/PP_5263 | multidrug resistance protein NorM/GGDEF domain‑containing protein |
| ? | NC_002947 | 6009242 = | 2 (0.060) | coding (1667/1668 nt) | PP_5263 | GGDEF domain‑containing protein | |||||
GCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAACCCGCGCAACAACGTCAGCTGCTCTTCACTC > NC_002947/6009154‑6009382 | gCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTcc < 2:186436/103‑1 (MQ=255)gCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTcc > 1:186436/1‑103 (MQ=255) ACGCCCGCTCCCACAGGGACCGCGCAATCC‑TGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGcc < 1:496380‑M1/150‑1 (MQ=255) ACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCAt < 1:188375‑M1/111‑1 (MQ=255) ACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCAt > 2:188375‑M1/1‑111 (MQ=255) GCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATc > 2:811095‑M1/1‑110 (MQ=255) GCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATc < 1:811095‑M1/110‑1 (MQ=255) GCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCtt < 1:538464‑M1/150‑1 (MQ=255) gcccgctcccacagggaccgcgcaatcctgtgggagcgggcgtgcccgcgaagaggcccTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCGAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCtt > 2:845215‑M2/60‑150 (MQ=255) ccgctcccacagggaccgcgcaatcctgtgggagcgggcgtgcccgcgaagaggcccTAAAGGACACCCTCCAACTgg > 1:619198‑M2/58‑78 (MQ=255) ccgctcccacagggaccgcgcaatcctgtgggagcgggcgtgcccgcgaagaggcccTAAAGGACACCCTCCAACTgg < 2:619198‑M2/21‑1 (MQ=255) ccgctcccacagggaccgcgcaatcctgtgggagcgggcgtgcccgcgaagaggcccTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGc > 1:605077‑M2/58‑150 (MQ=255) ccgctcccacagggaccgcgcaatcctgtgggagcgggcgtgcccgcgaagaggcccTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGc > 1:95330‑M2/58‑150 (MQ=255) GCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCgg < 1:72695‑M1/120‑1 (MQ=255) GCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCgg > 2:72695‑M1/1‑120 (MQ=255) gctcccacagggaccgcgcaatcctgtgggagcgggcgtgcccgcgaagaggcccTAAAGGACACCCTCCAACTggcg > 1:789479‑M2/56‑78 (MQ=255) gctcccacagggaccgcgcaatcctgtgggagcgggcgtgcccgcgaagaggcccTAAAGGACACCCTCCAACTggcg < 2:789479‑M2/23‑1 (MQ=255) tcccacagggaccgcgcaatcctgtgggagcgggcgtgcccgcgaagaggcccTAAAGGACACCCTCCAACTggcggc < 1:55565‑M2/25‑1 (MQ=255) tcccacagggaccgcgcaatcctgtgggagcgggcgtgcccgcgaagaggcccTAAAGGACACCCTCCAACTggcggc > 2:55565‑M2/54‑78 (MQ=255) tcccacagggaccgcgcaatcctgtgggagcgggcgtgcccgcgaagaggcccTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCt > 2:594239‑M2/54‑150 (MQ=255) cccacagggaccgcgcaatcctgtgggagcgggcgtgcccgcgaagaggcccTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTg < 1:594239‑M2/98‑1 (MQ=255) ccacatggaccgcgcaatcctgtgggagcgggcgtgcccgcgaagaggcccTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTgg > 2:509759‑M2/52‑150 (MQ=255) ccacagggaccgcgcaatcctgtgggagcgggcgtgcccgcgaagaggcccTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTgg > 1:104389‑M2/52‑150 (MQ=255) ccacagggaccacgcaatcctgtgggagcgggcgtgcccgcgaagaggcccTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTgg > 2:881628‑M2/52‑150 (MQ=255) CACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCCACTGGCGACCAGGCGCCTGCAGCAAATACGCCATAAATTCCCCTATCGGTAGCGGTCTGCTGACCAGTAGGCCTTGCACCTGGt < 1:82340‑M1/150‑1 (MQ=255) ACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATc < 2:699‑M1/112‑1 (MQ=255) ACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATc > 1:699‑M1/1‑112 (MQ=255) gcgtgcccgcgaagaggcccTAAAGGACACGATACAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATTAATTCACCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCTAAACCCGCGCAACAACGTCAgct > 1:1014665‑M2/21‑150 (MQ=255) cccgcgaagaggcccTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAACCCGCGCAACAACGTCAGCTGctct < 2:104389‑M2/135‑1 (MQ=255) cgaagaggcccTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAACCCGCGCAACAACGTCAGCTGCTCTTCAc > 1:904036‑M2/12‑150 (MQ=255) aagaggcccTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCGAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAACCCGCGCAACAACGTCAGCTGCTCTTCActc < 1:845215‑M2/141‑1 (MQ=255) | GCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑ATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAACCCGCGCAACAACGTCAGCTGCTCTTCACTC > NC_002947/6009154‑6009382 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |