| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_002947 | 1,842,677 | Δ53 bp | coding (2107‑2159/2754 nt) | gacS ← | sensor protein GacS |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 1842677 | 1842729 | 53 | 41 [0] | [0] 40 | gacS | sensor protein GacS |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1842676 | 0 (0.000) | 40 (0.930) | 36/264 | 0.3 | 100% | coding (2160/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | 1842730 = | 0 (0.000) | coding (2106/2754 nt) | gacS | sensor protein GacS | |||||
TAGTCGTCCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACATCCATCAGCACCAGGTCGAACAATTCTTCCTGCACGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGAC > NC_002947/1842527‑1842819 | tAGTCGTCCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATC < 1:804297‑M1/150‑1 (MQ=255) aGTCGTCCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCc < 1:158773‑M1/150‑2 (MQ=255) gtcCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcat > 2:68967‑M1/1‑145 (MQ=255) gtgtgcATCAAAGCTCGTTGTTCGTTGGCCATGGCATGGGCAGTGAGGGCGTCGATCTGCAGCGGGTTGCCGCTCTGGGTGGTCTCCCACAGGCGGATCTGTTCGGTACATGCGGTGCCGTCCATGCCGGGCATCcgcataaccattgtt < 2:179256‑M1/149‑16 (MQ=255) gCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCTGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacg < 1:555953‑M1/150‑20 (MQ=255) aacaacGCGCGTTTTTCGTTGGCCATGGCATTGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggc > 2:640041‑M1/1‑129 (MQ=255) aacaacGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggc < 2:619561‑M1/150‑22 (MQ=255) gcgcgTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggcaagtac < 1:184065‑M1/150‑28 (MQ=255) gcgTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacct > 2:80858‑M1/1‑121 (MQ=255) cgTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctc < 1:566827‑M1/150‑31 (MQ=255) gTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcg < 1:68967‑M1/150‑32 (MQ=255) gCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtc > 2:518843‑M1/1‑108 (MQ=255) gCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtc > 2:1014987‑M1/1‑108 (MQ=255) catggcatggGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtctt > 1:702774‑M1/1‑106 (MQ=255) ggcatggGCAGTGAGGGCGACGATCGGCAGCGGGTTACCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcga < 1:88824‑M1/150‑48 (MQ=255) gcatggGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgag < 2:770496‑M1/150‑49 (MQ=255) gcatggGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgc < 1:1058976‑M1/105‑4 (MQ=255) gcatggGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgc > 2:1058976‑M1/1‑102 (MQ=255) gTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttt < 2:702774‑M1/150‑58 (MQ=255) gAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggttttta < 1:80858‑M1/150‑60 (MQ=255) gacgaTCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagca > 2:580560‑M1/1‑85 (MQ=255) gacgaTCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagca > 2:277795‑M1/1‑85 (MQ=255) gacgaTCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggcttttaccagca > 2:577208‑M1/1‑85 (MQ=255) gCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattg > 2:781636‑M1/1‑77 (MQ=255) gCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattg < 1:781636‑M1/90‑14 (MQ=255) tgtTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcag > 1:679983‑M1/1‑56 (MQ=255) gtTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcaga < 1:277795‑M1/150‑96 (MQ=255) ccACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCggcataaccattgttgacggccagtacctcggcacccaggtcttcgagcag > 2:257071‑M1/1‑49 (MQ=255) ccACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcag < 1:257071‑M1/100‑52 (MQ=255) cacaGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtatttt > 2:458137‑M1/1‑48 (MQ=255) cacaGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagg > 1:580373‑M1/1‑48 (MQ=255) cacaGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagg < 2:580373‑M1/100‑53 (MQ=255) ggATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATAcgcataaccagtgttgacggccagtaccgacgaagacaggtctgcgagcagggtttttaggagcagcaggttgggggcattgtcgttgacgcagagtattttcggtcgt > 2:451460‑M1/1‑41 (MQ=255) gATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtc > 2:640609‑M1/1‑40 (MQ=255) tGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctg > 1:280758‑M1/1‑36 (MQ=255) ttCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggc > 1:378741‑M1/1‑34 (MQ=255) gTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgtt > 1:780328‑M1/1‑30 (MQ=255) cAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgttggg < 2:262841‑M1/150‑124 (MQ=255) gcgcGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgttggggtt > 2:694968‑M1/1‑24 (MQ=255) ccGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgttggggttgctccc > 1:477224‑M1/1‑18 (MQ=255) gggCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcagattagcggcattgtagtcgaaaagcagaagtcactgtcgtcgcgggccgttggggttgctcccctcggccagcg < 1:458137‑M1/150‑144 (MQ=255) | TAGTCGTCCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACATCCATCAGCACCAGGTCGAACAATTCTTCCTGCACGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGAC > NC_002947/1842527‑1842819 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |