| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_002947 | 1,842,677 | Δ53 bp | coding (2107‑2159/2754 nt) | gacS ← | sensor protein GacS |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 1842677 | 1842729 | 53 | 41 [0] | [0] 40 | gacS | sensor protein GacS |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1842676 | 0 (0.000) | 40 (0.930) | 36/264 | 0.3 | 100% | coding (2160/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | 1842730 = | 0 (0.000) | coding (2106/2754 nt) | gacS | sensor protein GacS | |||||
GCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACATCCATCAGCACCAGGTCGAACAATTCTTCCTGCACGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGTTGGGGTTGCTCCCCTCGGCCAGCG > NC_002947/1842581‑1842872 | agtcgtccatgccgctgtgcaacaacgcgcgtttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcc < 1:158773‑M2/1‑1 (MQ=255) gtccatgccgctgtgcaacaacgcgcgtttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCAt > 2:68967‑M2/146‑150 (MQ=255) gtgtgcatcaaagctcgttgttcgttggccatggcatgggcagtgagggcgtcgatctgcagcgggttgccgctctgggtggtctcccacaggcggatctgttcggtacatgcggtgccgtccatgccgggcatcCGCATAACCAttgtt < 2:179256‑M2/15‑1 (MQ=255) gcaacaacgcgcgtttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggctgatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACg < 1:555953‑M2/19‑1 (MQ=255) aacaacgcgcgtttttcgttggccatggcattggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGc > 2:640041‑M2/130‑150 (MQ=255) aacaacgcgcgtttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGc < 2:619561‑M2/21‑1 (MQ=255) gcgcgtttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCAAGTAc < 1:184065‑M2/27‑1 (MQ=255) gcgtttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCt > 2:80858‑M2/122‑150 (MQ=255) cgtttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTc < 1:566827‑M2/30‑1 (MQ=255) gtttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCg < 1:68967‑M2/31‑1 (MQ=255) gccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTc > 2:518843‑M2/109‑150 (MQ=255) gccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTc > 2:1014987‑M2/109‑150 (MQ=255) catggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCtt > 1:702774‑M2/107‑150 (MQ=255) ggcatgggcagtgagggcgacgatcggcagcgggttaccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGa < 1:88824‑M2/47‑1 (MQ=255) gcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGc < 1:1058976‑M2/3‑1 (MQ=255) gcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGc > 2:1058976‑M2/103‑105 (MQ=255) gcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAg < 2:770496‑M2/48‑1 (MQ=255) gtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGtttt < 2:702774‑M2/57‑1 (MQ=255) gagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTa < 1:80858‑M2/59‑1 (MQ=255) gacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACcagca > 2:277795‑M2/86‑150 (MQ=255) gacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACcagca > 2:580560‑M2/86‑150 (MQ=255) gacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGCTTTTACcagca > 2:577208‑M2/86‑150 (MQ=255) gcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCAttg > 2:781636‑M2/78‑90 (MQ=255) gcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCAttg < 1:781636‑M2/13‑1 (MQ=255) tgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCag > 1:679983‑M2/57‑150 (MQ=255) gttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCaga < 1:277795‑M2/95‑1 (MQ=255) ccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcGGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAg > 2:257071‑M2/50‑100 (MQ=255) ccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAg < 1:257071‑M2/51‑1 (MQ=255) cacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAgg > 1:580373‑M2/49‑100 (MQ=255) cacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAgg < 2:580373‑M2/52‑1 (MQ=255) cacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTAtttt > 2:458137‑M2/49‑150 (MQ=255) ggatctgttcggtacaggcgcggccgtccatgccgggcataCGCATAACCAGTGTTGACGGCCAGTACCGACGAAGACAGGTCTGCGAGCAGGGTTTTTAGGAGCAGCAGGTTGGGGGCATTGTCGTTGACGCAGAGTATTTTCGgtcgt > 2:451460‑M2/42‑150 (MQ=255) gatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGgtcgtc > 2:640609‑M2/41‑150 (MQ=255) tgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTg > 1:280758‑M2/37‑150 (MQ=255) ttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGc > 1:378741‑M2/35‑150 (MQ=255) gtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGtt > 1:780328‑M2/31‑150 (MQ=255) caggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGTTggg < 2:262841‑M2/123‑1 (MQ=255) gcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGTTGGGGtt > 2:694968‑M2/25‑150 (MQ=255) ccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGTTGGGGTTGCTccc > 1:477224‑M2/19‑150 (MQ=255) gggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGATTAGCGGCATTGTAGTCGAAAAGCAGAAGTCACTGTCGTCGCGGGCCGTTGGGGTTGCTCCCCTCGGCCAGCg < 1:458137‑M2/143‑1 (MQ=255) | GCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACATCCATCAGCACCAGGTCGAACAATTCTTCCTGCACGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGTTGGGGTTGCTCCCCTCGGCCAGCG > NC_002947/1842581‑1842872 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |