| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 138938 | 55 (1.860) | 8 (0.270) | 8/246 | NT | 12.6% | coding (1566/1782 nt) | kinB | alginate biosynthesis sensor protein KinB |
| ? | NC_002947 | = 138962 | 56 (1.900) | coding (1542/1782 nt) | kinB | alginate biosynthesis sensor protein KinB | |||||
AATTTCCTTGCACAGCGCGAGCCCCAGCCCAGCGCCGCCTTTCTTGCGACCTACCTGCACGAAAGGCTCGAAGATGCGCGCTTGTTGCCCATAGGAAATGCCCTCTCCGTTGTCCTCGACGCTGATGATCACCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/138803‑138938‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTGCATGCCAGAC‑GGCATGCAGAACGGGTGATCATCAGCGTCGAGGACAACGGAGAGGGCATTTCCTATGGGCAACAAGCGCGCATCTTCGAGCCTTTCGTGCAGGTAGGTCGCAAGAAAGGCGGCGCTGGGC < NC_002947/138962‑138829 AATTTCCTTGCACAGCGCGAGCCCCAGCCCAGCGCCGCCTTTCTTGCGACCTACCTGCACGAAAGGCTCGAAGATGCGCGCTTGTTGCCCATAGGAAATGCCCTCTCCGTTGTCCTCGACGCTGATGATCACCCGTCCTGCATGCCAGAC < 1:550134/150‑1AATTTCCTTGCACAGCGCGAGCCCCAGCCCAGCGCCGCCTTTCTTGCGACCTACCTGCACGAAAGGCTCGAAGATGCGCGCTTGTTGCCCATAGGAAATGCCCTCTCCGTTGTCCTCGACGCTGATGATCACCCGTCCTGCATGCCAGAC > 2:221408/1‑150 CTTGCACAGCGCGAGCCCCAGCCCAGCGCCGCCTTTCTTGCGACCTACCTGCACGAAAGGCTCGAAGATGCGCGCTTGTTGCCCATAGGAAATGCCCTCTCCGTTGTCCTCGACGCTGATGATCACCCGTTCTGCATGCCAGAC‑GGCATG < 2:141490/150‑1 ATAGGAAATGCCCTCTCCGTTGTCCTCGACGCTGATGATCACCCGTCCTGCATGCCAGAC‑GGCATGCAGAACGGG < 1:301219/75‑1 ATAGGAAATGCCCTCTCCGTTGTCCTCGACGCTGATGATCACCCGTCCTGCATGCCAGAC‑GGCATGCAGAACGGG > 2:301219/1‑75 TCGACGCTGATGATCACCCGTTCTGCATGCC‑GTCTGGCATGCAGGACGGGTGATCATCAGCGTCGAGGACAACGGAGAGGGCATTTCCTATGGGCAACAAGCGCGCATCTTCGAGCCTTTCGTGCAGGTAGGTCGCAAGAAAGGCGGCGC > 1:221408/1‑150 ACCCGTTCTGCATGCCGTCT‑GGCATGCAGGACGGGTGATCATCAGCGTCGAGGACAACGGAGAGGGCATTTCCTATGGGCAACAAGCGCGCATCTTCGAGCCTTTCGTGCAGGTAGGTCGCAAGAAAGGCGGCGCTGGGC < 2:150752/140‑1 ACCCGTTCTGCATGCC‑GTCTGGCATGCAGGACGGGTGATCATCAGCGTCGAGGACAACGGAGAGGGCATTTCCTATGGGCAACAAGCGCGCATCTTCGAGCCTTTCGTGCAGGTAGGTCGCAAGAAAGGCGGCGCTGGGC > 1:150752/1‑140 AATTTCCTTGCACAGCGCGAGCCCCAGCCCAGCGCCGCCTTTCTTGCGACCTACCTGCACGAAAGGCTCGAAGATGCGCGCTTGTTGCCCATAGGAAATGCCCTCTCCGTTGTCCTCGACGCTGATGATCACCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/138803‑138938‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTGCATGCCAGAC‑GGCATGCAGAACGGGTGATCATCAGCGTCGAGGACAACGGAGAGGGCATTTCCTATGGGCAACAAGCGCGCATCTTCGAGCCTTTCGTGCAGGTAGGTCGCAAGAAAGGCGGCGCTGGGC < NC_002947/138962‑138829 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |