New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 343512 | 42 (1.420) | 6 (0.210) | 7/236 | NT | 12.7% | intergenic (‑65/‑175) | PP_5439/PP_5440 | hypothetical protein/hypothetical protein |
? | NC_002947 | = 343531 | 42 (1.480) | intergenic (‑84/‑156) | PP_5439/PP_5440 | hypothetical protein/hypothetical protein |
CGCTTGGCCGCTGCGTACCATGCGGTTCTGCTTGGCCTTGCTGGCGGCGCGCTTGGCGCGTTTCTGTTGCTTGGTAGGGGTGGCCATGGGGAAATCCTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/343361‑343512 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagcTGCAGCGCCCAGGCGC‑GCCGCTTGGGTTTATCGGGCAATTGCGCTTCAATACGCGCACTTTCAGACTCACCCAAGGATTTCCCCATGGCCACCCCTACCAAGCAACAGAAACGCGCCAAGCGCGCCGCCAGCAAGGCCAAGCAG < NC_002947/343531‑343388 CGCTTGGCCGCTGCGTACCATGCGGTTCTGCTTGGCCTTGCTGGCGGCGCGCTTGGCGCGTTTCTGTTGCTTGGTAGGGGTGGCCATGGGGAAATCCTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAA > 1:716949/1‑150 CTTGGCCGCTGCGTATCATGCGGTTCTGCTTGGCCTTGCTGGCGGCGCGCTTGGCGCGTTTCTGTTGCTTGGTAGGGGTGGCCATGGGGAAATCCTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGC < 2:555810/150‑1 GGTTCTGCTTGGCCTTGCTGGCGGCGCGCTTGGCGCGTTTCTGTTGCTTGGGAGGGGTGGCCATGGGGAAATCCTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACTCAAGCTGCAGCGCCCAGGCGC‑GCCGC < 1:300506/150‑1 GCTTGGCCTTGCTGGCGGCGCGCTTGGCGCGTTTCTGTTGCTTGGTAGGGGTGGCCATGGGGAAATCCTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCTGCAGCGCCCAGGCGC‑GCCGCTTGGGT < 1:680237/150‑1 CTTGGTAGGGGTGGCCATGGGGAAATCCTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCTGCAGCGCCCAGGCGC‑GCCGCTTG < 1:204053/107‑1 CTTGGTAGGGGTGGCCATGGGGAAATCCTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCTGCAGCGCCCAGGCGC‑GCCGCTTG > 2:204053/1‑107 CCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGGGTTTATCGGGCAATTGCGCTTCAATACGCGCACTTTCAGACTCACCCAAGGATTTCCCCATGGCCACCCCTACCAAGCAACAGAAACGCGCCAAGCGCGCCGCCAGCAAG > 2:512307/1‑150 ATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGGGTTTATCGGGCAATTGCGCTTCAATACGCGCACTTTCAGACTCACCCAAGGATTTCCCCATGGCCACCCCTACCAAGCAACAGAAACGCGCCAAGCGCGCCGCCAGCAAGGCC < 1:512307/150‑1 CCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGGGTTTATCGGGCAATTGCGCTTCAGTACGCGCACTTTCAGACTCACCCAAGGATTGCCCCATGGCCACACCTACCAAGCAACAGAAACGCGCCAAGCGCGCCGCCAGCAAGGCCAAGCAG > 1:417744/1‑150 CGCTTGGCCGCTGCGTACCATGCGGTTCTGCTTGGCCTTGCTGGCGGCGCGCTTGGCGCGTTTCTGTTGCTTGGTAGGGGTGGCCATGGGGAAATCCTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/343361‑343512 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagcTGCAGCGCCCAGGCGC‑GCCGCTTGGGTTTATCGGGCAATTGCGCTTCAATACGCGCACTTTCAGACTCACCCAAGGATTTCCCCATGGCCACCCCTACCAAGCAACAGAAACGCGCCAAGCGCGCCGCCAGCAAGGCCAAGCAG < NC_002947/343531‑343388 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |