New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 343512	42 (1.420)	6 (0.210)	7/236	NT	12.7%	intergenic (‑65/‑175)	PP_5439/PP_5440	hypothetical protein/hypothetical protein
	?	NC_002947	= 343531	42 (1.480)					intergenic (‑84/‑156)	PP_5439/PP_5440	hypothetical protein/hypothetical protein

GCGGTTCTGCTTGGCCTTGCTGGCGGCGCGCTTGGCGCGTTTCTGTTGCTTGGTAGGGGTGGCCATGGGGAAATCCTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTGGCAGCCTGTCACTGCGCCAATTCGGCGTCCGTGAGTGATGCGCACGTTTGCGCTACAAAGGA  >  NC_002947/343382‑343680                                                                                                                                                       |                                                                                                                                                      gCGGTTCTGCTTGGCCTTGCTGGCGGCGCGCTTGGCGCGTTTCTGTTGCTTGGTAGGGGTGGCCATGGGGAAATCCTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCa                                                                                                                                                       <  2:525893/150‑1 (MQ=255)       cTGCTTGGCCTTGCTGGCGGCGCGCTTGGCGCGTTTCTGTTGCTTGGTAGGTGTGGCCATGGGGCAATCCTTGGGTGAGTCTGAAAGTGCGCGTACTGAAGCGCAATTGCCCGATAAACCCAAGCTGCAGCGCCCAGGCGC‑GCCgcttgg                                                                                                                                                 >  1:417744‑M2/1‑144 (MQ=255)         gCTTGGCCTTGCTGGCGGCGCGCTTGGCGCGTTTCTGTTGCTTGGTAGGGGTGGCCATGGGGAAATCCTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTgaga                                                                                                                                               >  2:621584/1‑150 (MQ=255)             ggCCTTGCTGGCGGCGCGCTTGGCGCGTTTCTGTTGCTTGGTAGGGGTGGCCATGGGGAAATCCTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCTGCAGCGCCCAGGCGC‑GCCgcttgggtttat                                                                                                                                           <  1:512307‑M2/150‑13 (MQ=255)                cTTGCTGGCGGCGCGCTTGGCGCGTTTCTGTTGCTTGGTAGGGGTGGCCATGGGGAAATCCTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCTGCAGCGCCCAGGCGC‑GCCgcttgggtttatcgg                                                                                                                                        >  2:512307‑M2/1‑135 (MQ=255)                  tGCTGGCGGCGCGCTTGGCGCGTTTCTGTTGCTTGGTAGGGGTGGCCATGGGGAAATCCTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTgg                                                                                                                                      <  2:760250/150‑1 (MQ=255)                      ggcggcGCGCTTGGCGCGTTTCTGTTGCTTGGTAGGGGTGGCCATGGGGAAATCCTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATa                                                                                                                                  >  1:500459/1‑150 (MQ=255)                              gcTTGGCGCGTTTCTGTTGCTTGGTAGGGGTGGCCATGGGGAAATCCTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATa                                                                                                                                  >  1:42479/1‑142 (MQ=255)                              gcTTGGCGCGTTTCTGTTGCTTGGTAGGGGTGGCCATGGGGAAATCCTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATa                                                                                                                                  <  2:42479/142‑1 (MQ=255)                                   gcgcGTTTCTGTTGCTTGGTAGGGGTGGCCATGGGGAAATCCTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGATTGAGATGTCTGTGGGATACATATCCAGatta                                                                                                                     >  1:3190/1‑150 (MQ=255)                                             cgatcctGGTAGGGGTGGCCATGGGGAAATCCTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGt                                                                                                           <  1:488650/144‑1 (MQ=255)                                              ttGCTTGGTAGGGGTGGCCATGGGGAAATCCTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTg                                                                                                          >  1:388994/1‑150 (MQ=255)                                                   tGGTAGGGGTGGCCATGGGGAAATCCTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGccc                                                                                                     <  2:136457/150‑1 (MQ=255)                                                    ggTAGGGGTGGCCATGGGGAAATCCTTGGGTGCGTCTGCGAGTGCACGTATTGAACGGCCAATGCATGGTAAACCCAAACGCC‑ACGGCTGGGCGCTTCATCTTGATATGTCTGTGGGATACATATCCAGATTATTCGGACCGTgagatcg                                                                                                    >  2:488650/1‑144 (MQ=255)                                                     gTAGGGGTGGCCATGGGGAAATCCTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTg                                                                                                   >  1:702376/1‑150 (MQ=255)                                                         gggTGGCCATGGGGAAATCCTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTa                                                                                               <  2:702376/150‑1 (MQ=255)                                                                     ggAAATCCTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCctg                                                                                   >  1:723320/1‑150 (MQ=255)                                                                            cTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGattatt                                                                                                                   <  2:263571/111‑1 (MQ=255)                                                                            cTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGattatt                                                                                                                   >  1:263571/1‑111 (MQ=255)                                                                                        tGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGCTTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCctgct                                                                                 >  1:777092/1‑133 (MQ=255)                                                                                        tGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCctgct                                                                                 <  2:777092/133‑1 (MQ=255)                                                                                         gAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTtggctgg                                                               >  1:728627/1‑150 (MQ=255)                                                                                          aaaGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATa                                                                                                                                  <  2:568363/82‑1 (MQ=255)                                                                                          aaaGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATa                                                                                                                                  >  1:568363/1‑82 (MQ=255)                                                                                          aaaGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCctgct                                                                                 >  1:309406/1‑131 (MQ=255)                                                                                          aaaGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCctgct                                                                                 <  2:309406/131‑1 (MQ=255)                                                                                             gTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTGGCAGc                                                           <  1:621584/150‑1 (MQ=255)                                                                                                 gcgTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCg                                                                                                            <  2:716147/97‑1 (MQ=255)                                                                                                 gcgTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCg                                                                                                            >  1:716147/1‑97 (MQ=255)                                                                                                 gcgTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCAACATGGCTGGCAGcagga                                                       >  2:444544/1‑146 (MQ=255)                                                                                                   gTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTGGCAGCCTGTCa                                                     <  2:716949/150‑1 (MQ=255)                                                                                                           gcgcAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTTGCAGCCTGTCACTGCGCCa                                             >  1:33102/1‑150 (MQ=255)                                                                                                                     ccGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTGGCAGCCTGTCACTGCGCCAATTCGGCGTc                                   <  2:723320/150‑1 (MQ=255)                                                                                                                     ccGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTGGCAGCCTGTCACTGCGCCAATTCGGCGTc                                   >  2:499841/1‑150 (MQ=255)                                                                                                                       gATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTGGCAGCCTGTCACTGCGCCAATTCGGCGTCCg                                 >  2:347093/1‑150 (MQ=255)                                                                                                                            aCCCAAGCGGC‑GCGCCTGGGCGCTGCAgcttgggtttatcgggcaattgcgcttcaatacgcgcactttcagactcacccaaggatttccccatggccacccctaccaagcaacagaaacgcgccaagcgcgccgccagcaaggccaagc                            <  1:680237‑M2/150‑124 (MQ=255)                                                                                                                            aCCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTGGCAGCCTGTCACTGCGCCAATTCg                                        <  1:671483/138‑1 (MQ=255)                                                                                                                            aCCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTGGCAGCCTGTCACTGCGCCAATTCg                                        >  2:671483/1‑138 (MQ=255)                                                                                                                             cccAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTGGCAGCCTGTCACTGCGCCAATTCGGCGTCCgtgagtg                           >  1:467217/1‑150 (MQ=255)                                                                                                                              ccAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTGGCAGCCTGt                                                       <  1:567603/121‑1 (MQ=255)                                                                                                                              ccAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTGGCAGCCTGt                                                       >  2:567603/1‑121 (MQ=255)                                                                                                                              ccAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTGGCAGCCTGTCACTGCGCCAATTCGGCGTCCgtgagtga                          >  2:588518/1‑150 (MQ=255)                                                                                                                              ccAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTGGCAGCCTGTCACTGCGCCAATTCGGCGTCCgtgagtg                           <  2:415445/149‑1 (MQ=255)                                                                                                                              ccAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTGGCAGCCTGTCACTGCGCCAATTCGGCGTCCgtgagtg                           >  1:415445/1‑149 (MQ=255)                                                                                                                               cAAGCGGC‑GCGCCTGGGCGCTGCAgcttgggtttatcgggcaattgcgcttcaatacgcgcactttcagactcacccaaggatttccccatggccacccctaccaag                                                                    <  1:204053‑M2/107‑84 (MQ=255)                                                                                                                               cAAGCGGC‑GCGCCTGGGCGCTGCAgcttgggtttatcgggcaattgcgcttcaatacgcgcactttcagactcacccaaggatttccccatggccacccctaccaag                                                                    >  2:204053‑M2/1‑24 (MQ=255)                                                                                                                                aaGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGAGGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTGGCAGCCTGTCACTGCGCCAATTCGGCGTCCGTGAGTGATg                        <  1:347093/150‑1 (MQ=255)                                                                                                                                  gcggc‑gCGCCTGGGCGCTGCAgcttgagtttatcgggcaattgcgcttcaatacgcgcactttcagactcacccaaggatttccccatggccacccctcccaagcaacagaaacgcgccaagcgcgccgccagcaaggccaagcagaacc                      <  1:300506‑M2/150‑130 (MQ=255)                                                                                                                                        gcgcCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTGGCAGCCTGTCACTGCGCCAATTCGGCGTCCGTGAGTGATGCGCACGt                 <  2:500459/150‑1 (MQ=255)                                                                                                                                        gcgcCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTGGCAGCCTGTCACTGCGCCAATTCGGCGTCCGTGAGTGATGCGCACGt                 >  2:255931/1‑150 (MQ=255)                                                                                                                                                  gcTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTGGCAGCCTGTCACTGCGCCAATTCGGCGTCCGTGAGTGATGCGCACGTTTGCGCTACa       >  2:362578/1‑150 (MQ=255)                                                                                                                                                     gCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTGGCAGCCTGTCACTGCGCCAATTCGGCGTCCGTGAGTGATGCGCACGTTTGCGCTACAAag    >  1:440924/1‑150 (MQ=255)                                                                                                                                                     gCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTGGCAGCCTGTCACTGCGCCAATTCGGCGTCCGTGAGTGATGCGCACGTTTGCGCTACAAag    <  2:467217/150‑1 (MQ=255)                                                                                                                                                       aGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTGGCAGCCTGTCACTGCGCCAATTCGGCGTCCGTGAGTGATGCGCACGTTTGCGCTACAAagga  >  1:567956/1‑150 (MQ=255)                                                                                                                                                       aGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTGGCAGCCTGTCACTGCGCCAATTCGGCGTCCGTGAGTGATGCGCACGTTTGCGCTACAAagga  <  2:728627/150‑1 (MQ=255)                                                                                                                                                       aGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTGGCAGCCTGTCACTGCGCCAATTCGGCGTCCGTGAGTGATGCGCACGTTTGCGCTACAAagga  >  1:567864/1‑150 (MQ=255)                                                                                                                                                       aGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTGGCAGCCTGTCACTGCGCCAATTCGGCGTCCGTGAGTGATGCGCACGTTTGCGCTACAAagga  <  1:588518/150‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                      GCGGTTCTGCTTGGCCTTGCTGGCGGCGCGCTTGGCGCGTTTCTGTTGCTTGGTAGGGGTGGCCATGGGGAAATCCTTGGGTGAGTCTGAAAGTGCGCGTATTGAAGCGCAATTGCCCGATAAACCCAAGCGGC‑GCGCCTGGGCGCTGCAGCTTGAGATGTCTGTGGGATACATATCCAGATTATTCGGACCGTGGGCCCTGCGTAGCTTCTCTCCTGCTGCCAGCCATGTTGGCTGGCAGCCTGTCACTGCGCCAATTCGGCGTCCGTGAGTGATGCGCACGTTTGCGCTACAAAGGA  >  NC_002947/343382‑343680

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.