| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1149928 = | 41 (1.390) | 4 (0.160) | 3/210 | NT | 14.0% | intergenic (‑169/+88) | PP_1008/gapA | RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase |
| ? | NC_002947 | = 2071204 | 14 (0.560) | intergenic (+113/+114) | PP_1846/PP_1847 | group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor | |||||
CTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1150088‑1149928‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcaagcccgctTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTAT < NC_002947/2071204‑2071060 CTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGG > 1:36191/1‑150CTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGG < 1:566397/150‑1CTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGG < 1:709048/150‑1CTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGG < 2:36191/150‑1 AACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGC > 1:39814/1‑113 AACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGC < 2:39814/113‑1 CCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCG > 1:58567/1‑150 CCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAG < 1:127233/113‑1 CCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAG > 2:127233/1‑113 CCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCG < 2:58567/150‑1 TTCGCGGGCAAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGC < 1:343065/150‑1 TTCGCGGGCAAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGC > 2:371613/1‑150 CGCGGGCAAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCG < 2:735377/150‑1 GCAAGCCCGCTTGTTTCGCGATGCGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCA < 1:574839/91‑1 GCAAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGTTTAA > 2:454873/1‑150 GCAAGCCCGCTTGTGTCGCGATGCGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCA > 2:574839/1‑91 AAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATC > 2:617796/1‑150 AAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATC > 1:295622/1‑150 CCGCTTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTAT < 1:371613/150‑1 CTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1150088‑1149928‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcaagcccgctTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTAT < NC_002947/2071204‑2071060 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |