New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1149928 = | 41 (1.390) | 4 (0.160) | 3/210 | NT | 14.0% | intergenic (‑169/+88) | PP_1008/gapA | RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase |
? | NC_002947 | = 2071204 | 14 (0.560) | intergenic (+113/+114) | PP_1846/PP_1847 | group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor |
ATACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACG > NC_002947/2071060‑2071353 | aTACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAagcgg < 1:371613‑M2/150‑6 (MQ=255) gATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAagcgggctt > 2:617796‑M2/1‑141 (MQ=255) gATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAagcgggctt > 1:295622‑M2/1‑141 (MQ=255) ttAAACGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAagcgggcttgc > 2:454873‑M2/1‑139 (MQ=255) cGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAagcgggcttgcccgcg < 2:735377‑M2/150‑17 (MQ=255) gCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAagcgggcttgcccgcgaa < 1:343065‑M2/150‑19 (MQ=255) gCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAagcgggcttgcccgcgaa > 2:371613‑M2/1‑132 (MQ=255) gCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCaa < 1:735377/150‑1 (MQ=255) cgcgTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAaca < 1:85839/150‑1 (MQ=255) gcgTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAacac > 1:194418/1‑150 (MQ=255) ccgTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCAc < 2:294077/150‑1 (MQ=255) cGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAagcgggcttgcccgcgaacacgggcgaagcccgtgccatccaccacgg < 2:58567‑M2/150‑49 (MQ=255) cGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTc < 2:561582/150‑1 (MQ=255) aCGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTcggg < 2:175780/150‑3 (MQ=255) cGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAagcgggcttgcccgcgaacacgggcgaagcccgtgccatccaccacggtgttggcttcgcgg > 1:58567‑M2/1‑88 (MQ=255) ggtgTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCaa < 2:194418/150‑1 (MQ=255) gtgtGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAg < 1:524572/150‑1 (MQ=255) tgAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCGCATCGCGACACAagcgggcttgc > 2:574839‑M2/1‑80 (MQ=255) tgAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCGCATCGCGAAACAagcgggcttgc < 1:574839‑M2/91‑12 (MQ=255) agagTACGGCGGGTTTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGc < 1:309749/150‑1 (MQ=255) cctcctACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCg > 2:192695/1‑150 (MQ=255) ctACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAagcgggcttgcccgcgaacacgggcgaagcccgtgccatccaccacggtgttggcttcgcgg > 2:127233‑M2/1‑51 (MQ=255) ctACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAagcgggcttgcccgcgaacacgggcgaagcccgtgccatccaccacggtgttggcttcgcgg < 1:127233‑M2/113‑63 (MQ=255) ccTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGc < 1:474199/149‑1 (MQ=255) aGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagccga > 2:636029/1‑150 (MQ=255) cccATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagccgaaa > 2:289224/1‑150 (MQ=255) cATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCATGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagccgaaagc > 1:454653/1‑150 (MQ=255) gACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCg < 1:192695/150‑1 (MQ=255) aaGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTAcg > 1:346572/1‑150 (MQ=255) | ATACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACG > NC_002947/2071060‑2071353 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |