New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1273256 =	24 (0.810)	5 (0.190)	4/216	NT	20.0%	intergenic (+41/+127)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
	?	NC_002947	1273345 =	19 (0.730)					intergenic (+130/+38)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein

GTACAAGAAGTGCCACGGCGCCTGATCGACTGACGCGATAAAAATCTGAGAGATGGCTCGAACACTGTGGGAGCGGGCGCGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTCGCCTGCTTCGCGGGCTTGCCCGCTCCCACAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1273407‑1273256 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacagtGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACTTCTTCTCGCTACCGCACGGGCACGGGTCGTTACGGCCAACGTCCTTCAGGGCGTTGCGTATCGGCTCCTGGTGGCCGT  >  NC_002947/1273345‑1273486                                                                                                                                                                                                                                                                                                        GTACAAGAAGTGCCACGGCGCCTGATCGACTGACGCGATAAAAATCTGAGAGATGGCTCGAACACTGTGGGAGCGGGCGCGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTCGCCTGCTTCGCGGGCTTGCCCGCTCCCACA                                                                                                                                                  >  1:504/1‑150                                                                  TGTGGGAGCGGGCGCGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTCGCCTGCTTCGCGGGCTTGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGT                                                                                                                 <  1:349717/118‑1                                                                  TGTGGGAGCGGGCGCGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTCGCCTGCTTCGCGGGCTTGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGT                                                                                                                 >  2:349717/1‑118                                                                     GGGAGCGGGCGCGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTCGCCTGCTTCGCGGGCTTGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACTTC                                                                              >  1:790129/1‑150                                                                       GAGCGGGCGCGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTCGCCTGCTTCGCGGGCTTGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACTTCTT                                                                            >  2:21436/1‑150                                                                             gcaCGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTCGCCTGCTTCGCGGGCTTGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACTTCTTCTCGCT                                                                      >  1:795472/4‑150                                                                                                                                          GCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACTTCTTCTCGCTACCGCACGGGCACGGGTCGTTACGGCCAACGTCCTTCAGGGCGTTGCGTATCGGCTCCTGG         >  2:665130/1‑150                                                                                                                                           CCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACTTCTTCTCGCTACCGCACGGGCACGGGTCGTTACGGCCAACGTCCTTCAGGGCGTTGCGTATCGGCTCCTGGT        <  2:790129/150‑1                                                                                                                                            CCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACTTCTTCTCGCTACCGCACGGGCACGGGTCGTTACGGCCAACGTCCTTCAGGGCGTTGCGTATCGGCTCCTGGTG       <  2:660344/150‑1                                                                                                                                                 CCCACAGTGTTCGGGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACTTCTTCTCGCTACCGCACGGGCACGGGTCGTTACGGCCAACGTCCTTCAGGGCGTTGCGTATCGGCTCCTGGTGGCCGa  <  2:637366/150‑2                                                                                                                                                                                                                                                                                                        GTACAAGAAGTGCCACGGCGCCTGATCGACTGACGCGATAAAAATCTGAGAGATGGCTCGAACACTGTGGGAGCGGGCGCGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTCGCCTGCTTCGCGGGCTTGCCCGCTCCCACAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1273407‑1273256 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacagtGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACTTCTTCTCGCTACCGCACGGGCACGGGTCGTTACGGCCAACGTCCTTCAGGGCGTTGCGTATCGGCTCCTGGTGGCCGT  >  NC_002947/1273345‑1273486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.