| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1305419 | 29 (0.980) | 7 (0.250) | 4/236 | NT | 21.9% | coding (904/924 nt) | livH | branched‑chain amino acid ABC transporter permease |
| ? | NC_002947 | = 1305440 | 22 (0.780) | coding (883/924 nt) | livH | branched‑chain amino acid ABC transporter permease | |||||
TGCTGATGGTGAACGAGCCCTGACTGTGCACGACCAGGCTGATGCCGTCGATGCTCAGTTTCAGGCCCAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1305267‑1305419‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggCCGA‑CCGGCATTCTGGGCCGCCCGGAGGTTGAAAAAGTATGAACAGAAATCTCAAACAGGCGTTCTTCAGCGCCTTGCTGGTCTGGGCCGTGGCCTTCCCGGTACTGGGCCTGAAACTGAGCATCGACGGCATCAGCCTGGTCGTGCAC < NC_002947/1305440‑1305292 TGCTGATGGTGAACGAGCCCTGACTGTGCACGACCAGGCTGATGCCGTCGATGCTCAGTTTCAGGCCCAGTACCGGGAAGGCCACGGCCCAGACCAGCCAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTC < 2:446312/150‑1 ACGACCAGGCTGATGCCGTCGATGCTCAGTTTCAGGCCCAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCT‑‑‑‑CCGA‑CCGGCATTCTGGGCCGCCCGGAG < 1:206047/147‑1 ACGACCAGGCTGATGCCGTCGATGCTCAGTTTCAGGCCCAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCT‑‑‑‑CCGA‑CCGGCATTCTGGGCCGCCCGGAG > 2:206047/1‑147 CCAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGCCGA‑CCGGCATTCTGGGCCGCCCGGAG > 1:405417/1‑114 CCAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGCCGA‑CCGGCATTCTGGGCCGCCCGGAG > 1:481280/1‑114 CCAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGCCGA‑CCGGCATTCTGGGCCGCCCGGAG < 2:405417/114‑1 CCAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGCCGA‑CCGGCATTCTGGGCCGCCCGGAG < 2:481280/114‑1 ACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCT < 1:351927/66‑1 ACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCT > 2:351927/1‑66 CTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGC‑CGGTCGGCCGGAGGTTGAAAAAGTATGAACAGAAATCTCAAACAGGCGTTCTTCAGCGCCTTGCTGGTCTGGGCCGTGGCCTTCCCGGTACTGGGCCT > 1:708794/1‑150 GGCCGA‑CCGGCATTCTGGGCCGCCCGGAGGTTGAAAAAGTATGAACAGAAATCTCAAACAGGCGTTCTTCAGCGCCTTGCTGGTCTGGGCCGTGGCCTTCCCGGTATTGGGCCTGAAACTGCGCATCGACGGCATCACCCTCGTTGTGCA > 2:326080/1‑150 GCCGA‑CCGGCATTCTGGGCCGCCCGGAGGTTGAAAAAGTATGAACAGAAATCTCAAACAGGCGTTCTTCAGCGCCTTGCTGGTCTGGGCCGTGGCCTTCCCGGTACTGGGCCTGAAACTGAGCATCGACGGCATCAGCCTGGTCGTGCAC > 1:592082/1‑150 TGCTGATGGTGAACGAGCCCTGACTGTGCACGACCAGGCTGATGCCGTCGATGCTCAGTTTCAGGCCCAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1305267‑1305419‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggCCGA‑CCGGCATTCTGGGCCGCCCGGAGGTTGAAAAAGTATGAACAGAAATCTCAAACAGGCGTTCTTCAGCGCCTTGCTGGTCTGGGCCGTGGCCTTCCCGGTACTGGGCCTGAAACTGAGCATCGACGGCATCAGCCTGGTCGTGCAC < NC_002947/1305440‑1305292 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |