| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1305419 | 29 (0.980) | 7 (0.250) | 4/236 | NT | 21.9% | coding (904/924 nt) | livH | branched‑chain amino acid ABC transporter permease |
| ? | NC_002947 | = 1305440 | 22 (0.780) | coding (883/924 nt) | livH | branched‑chain amino acid ABC transporter permease | |||||
TGAACGAGCCCTGACTGTGCACGACCAGGCTGATGCCGTCGATGCTCAGTTTCAGGCCCAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAGCAGGACAAGAACCAACAAGCCGAATGCCACCACGTCCTTGTACTGGTCGCCGAAGATATCGGCACCGAACGCTTCGGCCACGCCCAGCACCAGCCCGCCGAGCATGGCGCCCGGGATG > NC_002947/1305276‑1305567 | tGAACGAGCCCTGACTGTGCACGACCAGGCTGATGCCGTCGATGCTCAGTTTCAGGCCCAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGcc > 1:424058/1‑150 (MQ=255) gAACGAGCCCTGACTGTGCACGACCAGGCTGATGCCGTCGATGCTCAGTTTCAGGCCCAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCTTGTTTGAGATTTCTGTTCATACTTTTTCACCCTCCGggcggcgc > 1:326080/1‑148 (MQ=255) cTGACTGTGCACGACCAGGCTGATGCCGTCGATGCTCAGTTTCAGGCCCAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCg > 2:424012/1‑150 (MQ=255) gtgCACGACCAGGCTGATGCCGTCGATGCTCAGTTTCAGGCCCAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGc > 1:592082‑M2/1‑149 (MQ=255) tgCACAACGAGGGTGATGCCGTCGATGCGCAGTTTCAGGCCCAATACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGcc > 2:326080‑M2/1‑148 (MQ=255) aCGACCAGGCTGATGCCGTCGATGCTCAGTTTCAGGCCCAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCT‑‑‑cgaccggcattctgggccgcccggag > 2:206047‑M1/1‑121 (MQ=255) aCGACCAGGCTGATGCCGTCGATGCTCAGTTTCAGGCCCAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCT‑‑‑cgaccggcattctgggccgcccggag < 1:206047‑M1/147‑27 (MQ=255) aCCAGGCTGATGCCGTCGATGCTCAGTTTCAGGCCCAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATa > 2:541871/1‑150 (MQ=255) cAGGCTGATGCCGTCGATGCTCAGTTTCAGGCCCAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAGc > 2:248819/1‑150 (MQ=255) cGTCGATGCTCAGTTTCAGGCCCAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAGCAGGACAAGAAc < 2:424058/150‑1 (MQ=255) cGATGCTCAGTTTCAGGCCCAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAGCAGGACAAGAACcaa < 1:248819/150‑1 (MQ=255) cTCAGTTTCAGGCCCAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCCACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAGCAGGACAAGAACCAACAAGc < 1:238232/150‑1 (MQ=255) tCAGTTTCAGGCCCAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAGCAGGACAAGAACCAACAAGcc > 2:439981/1‑150 (MQ=255) tttCAGGCCCAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAGCAGGACAAGAACCAACAAGCCGAAt < 1:84814/150‑1 (MQ=255) aGGCCCAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGCCGACCG‑GCATTCTGGGCCGCccggaggttgaaaaagtatgaacagaaatctcaaacag > 1:708794‑M2/1‑112 (MQ=255) ggCCCAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAGCAGGACAAGAACCAACAAGCCGAATGccac < 1:541871/150‑1 (MQ=255) ccAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGccgaccggcattctgggccgcccggag < 2:481280‑M1/114‑28 (MQ=255) ccAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGccgaccggcattctgggccgcccggag < 2:405417‑M1/114‑28 (MQ=255) ccAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGccgaccggcattctgggccgcccggag > 1:481280‑M1/1‑87 (MQ=255) ccAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGccgaccggcattctgggccgcccggag > 1:405417‑M1/1‑87 (MQ=255) ccAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAAAGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAGCAGGACAAGAACCAACAAGCCGAATGCcaccac > 1:496216/1‑150 (MQ=255) ccAGTACCGGGAAGGCCACGGCCCAGACCACCAAGCAGACGGACAAACCTGGGTTGATATTTCTGTTCATGCTGTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAGCAGAACAAGAACCAACAAGCCGAATGCcaccac > 1:337767/1‑150 (MQ=255) gTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAGCAGGACAAGAACCAACAAGCCGAATGCCACCACGTc < 1:483056/150‑1 (MQ=255) ccGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAGCAGGACAAGAACCAACAAGCCGAATGCCACCACGTCCtt < 1:439981/150‑1 (MQ=255) ggAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAg > 2:282937/1‑108 (MQ=255) ggAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAg < 1:282937/108‑1 (MQ=255) ggAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAGCAGGACAAGAACCAACAAGCCGAATGCCACCACGTCCTTGTa > 2:403474/1‑150 (MQ=255) aCGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAGCAGGACAAGaa < 1:629754/111‑1 (MQ=255) aCGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAGCAGGACAAGaa > 2:629754/1‑111 (MQ=255) aGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAGCAGGACAAGAACCAACAAGCCGaa > 2:418061/1‑117 (MQ=255) aGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGCCGGCCCAGAATGCCGG‑TCGGCCGGAATAGCAGGACAAGAACCAACAAGCCGaa < 1:418061/117‑1 (MQ=255) ccTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAGCAGGACAAGAACCAACAAGCCGAATGCCACCACGTCCTTGTACTGGTCGCCGAAGATATCGGCACCGAACGCTTCGGCCAc < 2:496216/150‑1 (MQ=255) cTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGgcggcccagaatgccggtcggccggaggttgaaaaagtatgaacagaaatctcaaacaggcgttcttcagcgccttgctggtctgggccgtggccttcccggtactgggcct > 1:708794‑M1/1‑38 (MQ=255) cTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAg > 2:308297/1‑68 (MQ=255) cTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAg < 1:308297/68‑1 (MQ=255) tttGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAGCAGGACAAGAACCAACAAGCCGAATGCCACCACGTCCTTGTACTGGTCGCCGAAGATATCGGCACCGAACGCTTCGGCCACGccc > 2:661817/1‑150 (MQ=255) gaTTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAGCAGGACAAGAACCAACAAGCCGAATGCCACCACGTCCTTGTACTGGTCGCCGAAGATATCGGCACCGAACGCTTCGGCCACGCCCAGCAc < 1:403474/150‑1 (MQ=255) aTTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAGCAGGACAAGAACCAACAAGCCGAATGCCACCACGTCCTTGTACTGGTCGCCGAAGATATCGGCACCTAACGCTTCGGCCACGCCCAGCAcc > 2:119733/1‑150 (MQ=255) atCATACTTTTTCAACGTCCGGGCGTCCCAGAATGCCGG‑TGAGCTGGAATAGCAGGTCAAGAACCAACAAGCCGAATGCCACCACGTCCTTGTACTAGTCGCCGAAGATATCGGCACCGAACGCTTCGGCCACGCCCAGCACCAGCccgc > 2:375714/2‑150 (MQ=255) aTACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAGCAGGACAAGAACCAACAAGCCGAATGCCACCACGTCCTTGTACTGGTCGCCGAAGATATCGGCACCGAACGCTTCGGCCACGCCCAGCACCAGCCCGCCGa < 1:424012/150‑1 (MQ=255) cTCCGGGCGGCCCAGAATGCCGG‑TCGGccggaggttgaaaaagtatgaacagaaatctcaaacaggcgttcttcagcgccttgctggtctgggccgtggccttcccggtactgg < 2:405417‑M2/114‑88 (MQ=255) cTCCGGGCGGCCCAGAATGCCGG‑TCGGccggaggttgaaaaagtatgaacagaaatctcaaacaggcgttcttcagcgccttgctggtctgggccgtggccttcccggtactgg > 1:481280‑M2/1‑27 (MQ=255) cTCCGGGCGGCCCAGAATGCCGG‑TCGGccggaggttgaaaaagtatgaacagaaatctcaaacaggcgttcttcagcgccttgctggtctgggccgtggccttcccggtactgg < 2:481280‑M2/114‑88 (MQ=255) cTCCGGGCGGCCCAGAATGCCGG‑TCGGccggaggttgaaaaagtatgaacagaaatctcaaacaggcgttcttcagcgccttgctggtctgggccgtggccttcccggtactgg > 1:405417‑M2/1‑27 (MQ=255) cTCCGGGCGGCCCAGAATGCCGG‑TCGGaggttgaaaaagtatgaacagaaatctcaaacaggcgttcttcagcgccttgctggtctgggccgtggccttcccggtactgggcctgaaactgagcatcgacggcatcagcctggtcgt > 2:206047‑M2/1‑27 (MQ=255) cTCCGGGCGGCCCAGAATGCCGG‑TCGGaggttgaaaaagtatgaacagaaatctcaaacaggcgttcttcagcgccttgctggtctgggccgtggccttcccggtactgggcctgaaactgagcatcgacggcatcagcctggtcgt < 1:206047‑M2/147‑121 (MQ=255) cGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAGCAGGACAAGAAGGAAAAAGACGAATGCCACCACGTCCTGGTACTGGTAGCCGAAAATATCGGCATCGAATGCTTCGGCCACGCCCAGCACCAGCCCGCCGAGCATGGCGCCCGGGAt > 1:413692/1‑150 (MQ=255) ggccgaccggcattctgggccgcccggaggttgaaaaagtatgaacagaaatctcaaacaggcgttcttcagcgccttgctggtctgggccgtggccttcccggtattgggcctgaaactgcgcatcgacggcatcaccctcgttgtgca > 2:326080‑M1/1‑2 (MQ=255) gccgaccggcattctgggccgcccggaggttgaaaaagtatgaacagaaatctcaaacaggcgttcttcagcgccttgctggtctgggccgtggccttcccggtactgggcctgaaactgagcatcgacggcatcagcctggtcgtgcac > 1:592082‑M1/1‑1 (MQ=255) | TGAACGAGCCCTGACTGTGCACGACCAGGCTGATGCCGTCGATGCTCAGTTTCAGGCCCAGTACCGGGAAGGCCACGGCCCAGACCAGCAAGGCGCTGAAGAACGCCTGTTTGAGATTTCTGTTCATACTTTTTCAACCTCCGGGCGGCCCAGAATGCCGG‑TCGGCCGGAATAGCAGGACAAGAACCAACAAGCCGAATGCCACCACGTCCTTGTACTGGTCGCCGAAGATATCGGCACCGAACGCTTCGGCCACGCCCAGCACCAGCCCGCCGAGCATGGCGCCCGGGATG > NC_002947/1305276‑1305567 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |