New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2295879 =	21 (0.710)	3 (0.110)	3/230	NT	9.0%	intergenic (+82/+51)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
	?	NC_002947	4282196 =	41 (1.480)					coding (1078/1089 nt)	PP_3753	AraC family transcriptional regulator

GGGTCGAACCGCAGTGGTTCGCCGAGGCGGCTTATCCGCGTGTGCGGAGCTGGCTGGAGGGGTGGCTGGCTTCGGAGCTGTTCAAGGCAATCATGGTCCGCTGATTAAACATCGGGCTGCACATGGGTCCGTGTGGGAGCGGGCATGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2296033‑2295879 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgaaCACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATG  >  NC_002947/4282196‑4282244                                                                                                                                                                                                              GGGTCGAACCGCAGTGGTTCGCCGAGGCGGCTTATCCGCGAGTAGGTGGCTGGCGTTAGGGGGTGCTGGCTTCGGCGCTGTTCAAGGCAATCATGGTCCGCTGATTAAACATCGGGCTGCACATGGGTCCGTGTGGGAGCGGGCATGCCC                                                        <  1:776332/150‑1    TCGAACCGCAGTGGTTCGCCGAGGCGGCTTATCCGCGTGTGCGGAGCTGGCTGGAGGGGTGGCTGGCTTCGGAGCTGTTAGATTAAGCCGTTTTGCTGTGATTAAACATCGGGCTGCACATGGGTCCGTGTGGGAGCGGGCATGCCCGCG                                                     >  1:578087/1‑150                                                       TGGAGGGGTGGCTGGCTTCGGAGCTGTTCAAGGCAATCATGGTCCGCTGATTAAACATCGGGCTGCACGTGGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGACATCCACCGCGGTGCCCGCTTCGCGGGCATG  <  2:37975/150‑1                                                                                                        ATTAAACATCGGGCTGCACATGGGTCCGTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCAT   <  1:147755/100‑1                                                                                                        ATTAAACATCGGGCTGCACATGGGTCCGTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCAT   >  2:147755/1‑100                                                                                                                                                                                                              GGGTCGAACCGCAGTGGTTCGCCGAGGCGGCTTATCCGCGTGTGCGGAGCTGGCTGGAGGGGTGGCTGGCTTCGGAGCTGTTCAAGGCAATCATGGTCCGCTGATTAAACATCGGGCTGCACATGGGTCCGTGTGGGAGCGGGCATGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2296033‑2295879 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgaaCACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATG  >  NC_002947/4282196‑4282244

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.