| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2429928 = | 32 (1.080) | 6 (0.280) | 6/180 | NT | 25.9% | intergenic (+15/+98) | PP_2129/PP_2130 | hypothetical protein/lytic transglycosylase |
| ? | NC_002947 | 2430009 = | 11 (0.510) | intergenic (+96/+17) | PP_2129/PP_2130 | hypothetical protein/lytic transglycosylase | |||||
TCGTATTCGGTGATCTACGGGCAGAAGCTGAATTCACCGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2430109‑2429928‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtaggagcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTTCGTCGAACGGGATCGAC > NC_002947/2430009‑2430155 TCGTATTCGGTGATCTACGGGCAGAAGCTGAATTCACCGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGT > 1:336055/1‑150 ATTCGGTGATCTACGGGCAGAAGCTGAATTCACCGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTA < 1:396252/150‑1 AAGCTGAATTCACCGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAA < 1:494751/150‑1 AAGCTGAATTCACCGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTGAACCCGCtcc < 2:336055/150‑4 CCGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTATACCGGCCTCTTCGCGGGTGAACCCCCTCCTACAAGGGGTTGAACGGTCGTTCTAGGAGCGGGTTCCCCCGCGCAGAGGCCGccccc > 1:335396/1‑145 CTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGC > 2:748825/1‑92 CTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGC < 1:748825/92‑1 CCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGC < 2:713509/106‑1 CCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGC > 1:713509/1‑106 CCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTC < 1:209389/101‑1 CCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTC > 2:209389/1‑101 GCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGC > 1:98106/1‑121 GCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGC < 2:98106/121‑1 TAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTCTAAATAa < 2:513512/150‑2 CGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGC < 2:494751/150‑1 CCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTTCGTCG > 1:465541/1‑150 CCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCA < 2:309577/88‑1 CCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCA > 1:309577/1‑88 AGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTTCGTCGAACGGG > 2:409736/1‑150 CGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTTCGTCGAACGGGATCGAC < 1:409736/150‑1 TCGTATTCGGTGATCTACGGGCAGAAGCTGAATTCACCGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2430109‑2429928‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtaggagcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTTCGTCGAACGGGATCGAC > NC_002947/2430009‑2430155 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |