New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2429928 =	32 (1.080)	6 (0.280)	6/180	NT	25.9%	intergenic (+15/+98)	PP_2129/PP_2130	hypothetical protein/lytic transglycosylase
	?	NC_002947	2430009 =	11 (0.510)					intergenic (+96/+17)	PP_2129/PP_2130	hypothetical protein/lytic transglycosylase

CAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTTCGTCGAACGGGATCGAC  >  NC_002947/2429868‑2430155                                                                                                                                              |                                                                                                                                                   cAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCGGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAACCCTTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTc                                                                                                                                            <  1:712147/150‑1 (MQ=255)                       aTGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGa                                                                                                                      >  1:236275/1‑150 (MQ=255)                             gTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATAcc                                                                                                                <  1:570518/150‑1 (MQ=255)                               aGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGt                                                                                                              <  2:415215/150‑1 (MQ=255)                                gAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTTAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGtt                                                                                                             <  1:785184/150‑1 (MQ=255)                                gAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAg                                                                                                                                                >  1:344386/1‑115 (MQ=255)                                gAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAg                                                                                                                                                <  2:344386/115‑1 (MQ=255)                                     ccTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGc                                                                                                        <  2:236275/150‑1 (MQ=255)                                     ccTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGCGTTCACCCGCGAAGAGCCCGGTACAGGCTCACCAGCAATCACATGTCATCGAAATACCGTTCACGc                                                                                                        >  2:335396/1‑150 (MQ=255)                                                      gCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGaa                                                                                                                     >  2:739551/1‑120 (MQ=255)                                                      gCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGaa                                                                                                                     <  1:739551/120‑1 (MQ=255)                                                         gggggCGGCCTCTGCGCGGGGGAACCCGCTCCTAGAACGACCGTTCAACCCCTTGTAGGAGGGGGTTCACCCGCGAAGAGGCCGGTATAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCgg                                                                                    >  1:335396‑M1/6‑150 (MQ=255)                                                                GCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAg                                                                                                                                       >  2:748825‑M1/1‑92 (MQ=255)                                                                GCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAg                                                                                                                                       <  1:748825‑M1/92‑1 (MQ=255)                                                                     ggaGCGGGTTCACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCtt                                                                        <  2:336055‑M1/147‑1 (MQ=255)                                                                     TTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCtt                                                                        <  1:494751‑M1/150‑1 (MQ=255)                                                                                 cccgctcctacaagggtttgagcggtcgttgtaggagcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGc                                                                                                        <  2:713509‑M2/45‑1 (MQ=255)                                                                                 cccgctcctacaagggtttgagcggtcgttgtaggagcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGc                                                                                                        >  1:713509‑M2/62‑106 (MQ=255)                                                                                  ccgctcctacaagggtttgagcggtcgttgtaggagcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTc                                                                                                            >  2:209389‑M2/61‑101 (MQ=255)                                                                                  ccgctcctacaagggtttgagcggtcgttgtaggagcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTc                                                                                                            <  1:209389‑M2/41‑1 (MQ=255)                                                                                    gctcctacaagggtttgagcggtcgttgtaggagcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGc                                                                                      >  1:98106‑M2/59‑121 (MQ=255)                                                                                    gctcctacaagggtttgagcggtcgttgtaggagcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGc                                                                                      <  2:98106‑M2/63‑1 (MQ=255)                                                                                         TACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAAt                                                    <  1:396252‑M1/150‑1 (MQ=255)                                                                                             ACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGa                                                >  1:336055‑M1/1‑150 (MQ=255)                                                                                                   gCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACa                                                                                                                                        <  1:342614/56‑1 (MQ=255)                                                                                                   gCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACa                                                                                                                                        >  2:342614/1‑56 (MQ=255)                                                                                                            cTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCt                                     <  1:737822/146‑1 (MQ=255)                                                                                                            cTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTaa                                 >  1:513512/1‑149 (MQ=255)                                                                                                            cTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACAGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGGCCGTAGATCACCGAATACGACAGCACGTTCt                                     >  2:737822/1‑146 (MQ=255)                                                                                                                taggagcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTCTAAAtaa                             <  2:513512‑M2/120‑2 (MQ=255)                                                                                                                      cgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGgcgc                       <  2:494751‑M2/126‑1 (MQ=255)                                                                                                                               ccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCa                                                                            >  1:309577‑M2/16‑88 (MQ=255)                                                                                                                               ccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCa                                                                            <  2:309577‑M2/73‑1 (MQ=255)                                                                                                                               ccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTtcgtcg              >  1:465541‑M2/16‑150 (MQ=255)                                                                                                                                     agaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTTCGTCGAACggg        >  2:409736‑M2/10‑150 (MQ=255)                                                                                                                                           cggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTTCGTCGAACGGGATCGAc  <  1:409736‑M2/147‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                   CAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTTCGTCGAACGGGATCGAC  >  NC_002947/2429868‑2430155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.