New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3337477	36 (1.220)	3 (0.110)	3/234	NT	7.4%	coding (638/1047 nt)	PP_2934	hypothetical protein
	?	NC_002947	= 3337513	41 (1.460)					coding (674/1047 nt)	PP_2934	hypothetical protein

GGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3337365‑3337477 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccATCAACATGACCGCCCCCACTCGCGGGTCGGTCTCGGGCGCCAGTTCGCTGCGGTCGGCAATCAGTATGCCGTGGGTCTTGCAGGC  <  NC_002947/3337513‑3337428                                                                                                                                                                                                         GGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCATCAACATGACCGCCCCCACTCGCGGGTCGGTCTCGG                                                   >  1:643625/1‑150        GCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCATCAACATGACCGCCCCCACTCGCGGGTCGGTCTCGGGCGCCAG                                            <  2:643625/150‑1          cctGACCGGGGGCGCCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGCCCGCAGCGAACTGGCGCCATCAACATGACCGCCCCCACTCACGGGTCGGTCTCGGGCGCCAGTT                                          <  2:141944/147‑1                                                                                                             GCGCCATCAACATGACCGCCCCCACTCGCGGGTCGGTCTCGGGCGCCAGTTCGCTGCGGTCGGCAATCAGTATGCCGTGGGTCTTGCAGGC  >  1:696479/1‑91                                                                                                             GCGCCATCAACATGACCGCCCCCACTCGCGGGTCGGTCTCGGGCGCCAGTTCGCTGCGGTCGGCAATCAGTATGCCGTGGGTCTTGCAGGC  <  2:696479/91‑1                                                                                                                                                                                                         GGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3337365‑3337477 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccATCAACATGACCGCCCCCACTCGCGGGTCGGTCTCGGGCGCCAGTTCGCTGCGGTCGGCAATCAGTATGCCGTGGGTCTTGCAGGC  <  NC_002947/3337513‑3337428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.