New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3337477	36 (1.220)	3 (0.110)	3/234	NT	7.4%	coding (638/1047 nt)	PP_2934	hypothetical protein
	?	NC_002947	= 3337513	41 (1.460)					coding (674/1047 nt)	PP_2934	hypothetical protein

GGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCGGGGTGCAGGTACCCGCACTGATCTACAGTGGCGACAGCGATCAGCTTGTGGCCGTAGACCGTAATGCCGAGG  >  NC_002947/3337334‑3337626                                                                                                                                                |                                                                                                                                                      ggccggcGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAgac                                                                                                                                                 >  1:665303/1‑150 (MQ=255)                cgcgTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTggg                                                                                                                                  >  1:518194/1‑150 (MQ=255)                   gTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAgac                                                                                                                                                 >  1:233935/1‑132 (MQ=255)                   gTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAgac                                                                                                                                                 <  2:233935/132‑1 (MQ=255)                          cTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATg                                                                                                                        >  2:700928/1‑150 (MQ=255)                           tGTCTCGCGCCCGCCCCGACCTGGAGCGTCTGCGTGAGTACTGCCTTGAGAGTCCGCATGACGCAGACGCCTGTAAGACCCACGGCATACTTATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGCCCCTCGAGTTGGGGCGTTCATGt                                                                                                                       <  2:196826/150‑1 (MQ=255)                                ggCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCatcaacatgaccgcccccactcgcgggtcggtctcgg                                                                                                                  >  1:643625‑M1/1‑113 (MQ=255)                                       gCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCatcaacatgaccgcccccactcgcgggtcggtctcgggcgccag                                                                                                           <  2:643625‑M1/150‑45 (MQ=255)                                         cctgaccGGGGGCGCCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGCCCGCAGCGAACTGGCGCCatcaacatgaccgcccccactcacgggtcggtctcgggcgccagtt                                                                                                         <  2:141944‑M1/147‑47 (MQ=255)                                                 ggAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCtgtt                                                                                                 >  2:44485/1‑150 (MQ=255)                                                 ggAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCtgtt                                                                                                 <  1:700928/150‑1 (MQ=255)                                                 ggAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGACtgtt                                                                                                 >  2:44495/1‑150 (MQ=255)                                                            gTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGcc                                                                                      >  1:680417/1‑150 (MQ=255)                                                               aGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATg                                                                                   <  2:324112/150‑1 (MQ=255)                                                                   cTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGGGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCt                                                                               >  2:750400/1‑150 (MQ=255)                                                                     gCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTgg                                                                             <  1:44495/150‑1 (MQ=255)                                                                     gCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTgg                                                                             <  1:44485/150‑1 (MQ=255)                                                                                ccGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCGGGGTGCAg                                                                  <  2:665303/150‑1 (MQ=255)                                                                                 cGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCGGGGTGCAgg                                                                 >  1:444884/1‑150 (MQ=255)                                                                                  gCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGc                                                                                                      >  1:543438/1‑112 (MQ=255)                                                                                  gCAGGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGc                                                                                                      <  2:543438/112‑1 (MQ=255)                                                                                               gCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATggcgc                                                                                                              >  1:696479‑M2/1‑86 (MQ=255)                                                                                               gCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATggcgc                                                                                                              <  2:696479‑M2/91‑6 (MQ=255)                                                                                                 cTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCGGGGTGCAGGTACCCGCACTGATCTa                                                 >  2:643435/1‑150 (MQ=255)                                                                                                   gCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCGGGGTGCAGGTACCCGCACTGATCTACa                                               >  1:667291/1‑150 (MQ=255)                                                                                                      aGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCGGGGTGCAGGTACCCGCACTGATCTACAGTg                                            <  1:643435/150‑1 (MQ=255)                                                                                                        aCCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCGGGGTGCAGGTACCCGCACTGATCTACAGTGGc                                          <  2:518194/150‑1 (MQ=255)                                                                                                         cccACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCGGGGTGCAg                                                                  <  1:422097/125‑1 (MQ=255)                                                                                                         cccACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCGGGGTGCAg                                                                  >  2:422097/1‑125 (MQ=255)                                                                                                          ccACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCggg                                                                        <  2:722622/118‑1 (MQ=255)                                                                                                          ccACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCggg                                                                        >  1:722622/1‑118 (MQ=255)                                                                                                                   aCTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCGGGGTGCAGGTACCCGCACTGATCTACAGTGGCGACAGCGATCa                               <  2:444884/150‑1 (MQ=255)                                                                                                                     tGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATg                                                                                   >  1:589837/1‑96 (MQ=255)                                                                                                                     tGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATg                                                                                   <  2:589837/96‑1 (MQ=255)                                                                                                                           ccGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCGGGGTGCAGGTACCCGCACTGATCTACAGTGGCGACAGCGATCAGCTTGTgg                       <  2:583904/150‑1 (MQ=255)                                                                                                                              aCCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCAt                                                                                    >  1:605566/1‑86 (MQ=255)                                                                                                                              aCCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCAt                                                                                    <  2:605566/86‑1 (MQ=255)                                                                                                                                       aaCTGGCGCCCGAGACCGACCCGTGAGTGGGGGCGGTCATGTTGATggcgccagttcgctgcgggcggcaatcagtatgccgtgggtcttgcaggcgtctgcgtcatgcggacgctccaggcagtactgacgcaggcgcccccggtcagg           <  2:141944‑M2/150‑105 (MQ=255)                                                                                                                                         cTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATggcgccagttcgctgcggtcggcaatcagtatgccgtgggtcttgcaggcgtctgcgtcatgcggacgctccaggcagtactgacgcagacgctccaggtcggggc         <  2:643625‑M2/150‑107 (MQ=255)                                                                                                                                          tGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCGGGGTGCAGGTACCCGCACTGATCTACAGt                                             <  2:254897/113‑1 (MQ=255)                                                                                                                                          tGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCGGGGTGCAGGTACCCGCACTGATCTACAGt                                             >  1:254450/1‑113 (MQ=255)                                                                                                                                          tGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCGGGGTGCAGGTACCCGCACTGATCTACAGt                                             <  2:254450/113‑1 (MQ=255)                                                                                                                                          tGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCGGGGTGCAGGTACCCGAACTGATCTACAGt                                             >  1:254897/1‑113 (MQ=255)                                                                                                                                            gcgcCatcaacatgaccgcccccactcgcgggtcggtctcgggcgccagttcgctgcggtcggcaatcagtatgccgtgggtcttgcaggc                                                                 <  2:696479‑M1/91‑87 (MQ=255)                                                                                                                                            gcgcCatcaacatgaccgcccccactcgcgggtcggtctcgggcgccagttcgctgcggtcggcaatcagtatgccgtgggtcttgcaggc                                                                 >  1:696479‑M1/1‑5 (MQ=255)                                                                                                                                              gcCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCGGGGTGCAGGTACCCGCACTGATCTACAGt                                             <  1:21420/109‑1 (MQ=255)                                                                                                                                              gcCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCGGGGTGCAGGTACCCGCACTGATCTACAGt                                             >  2:21420/1‑109 (MQ=255)                                                                                                                                                ccGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATggcgccagttcgctgcggtcggcaatcagtatgccgtgggtcttgcaggcgtctgcgtcatgcggacgctccaggcagtactgacgcagacgctccaggtcggggcgtgcgcc  >  1:643625‑M2/1‑37 (MQ=255)                                                                                                                                                |                                                                                                                                                      GGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCGGGGTGCAGGTACCCGCACTGATCTACAGTGGCGACAGCGATCAGCTTGTGGCCGTAGACCGTAATGCCGAGG  >  NC_002947/3337334‑3337626

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.