New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3825042 =	19 (0.640)	3 (0.100)	3/240	NT	14.1%	intergenic (‑38/+27)	kguE/ptxS	epimerase/2‑ketogluconate utilization repressor
	?	NC_002947	3825066 =	18 (0.620)					intergenic (‑62/+3)	kguE/ptxS	epimerase/2‑ketogluconate utilization repressor

TCGAAAGCCTGCTCGGTCGCTTGCGCGGCGACAGCGGCGCAGCCCGGCGCATCGACTTCAAGGCCAACCTGATCATCCGCGGTTCAACCCAACCCCAGTAAGAAAACGGCAGGCTTGCGCCTGCTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3825169‑3825042 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttTTCTTACTGGGGTTGGGTTGAACCGCGGATGATCAGGTTGGCCTTGAAGTCGATGCGCCGGGCTGCGCCGCTGTCGCCGCGCAAGCGACCGAGCAGGCTTTCGAAGGCCGCCACGCCGATACGCTCGGTGGGCTGGGCCAGTGCG  >  NC_002947/3825066‑3825210                                                                                                                                                                                                                                                                                   TCGAAAGCCTGCTCGGTCGCTTGCGCGGCGACAGCGGCGCAGCCCGGCGCATCGACTTCAAGGCCAACCTGATCATCCGCGGTTCAACCCAACCCCAGTAAGAAAACAGCAGGCGCAAGCCTGCCGTTTTCTTACTGGGGTTGGGTTGAA                                                                                                                             <  1:538351/150‑1                                             CGGCGCATCGACTTCAAGGCCAACCTGATCATCCGCGGTTCAACCCAACCCCAGTAAGAAAACAGCAGGCGCAAGCCTGCCGTTTTCTTACTG                                                                                                                                          >  1:468698/1‑93                                             CGGCGCATCGACTTCAAGGCCAACCTGATCATCCGCGGTTCAACCCAACCCCAGTAAGAAAACAGCAGGCGCAAGCCTGCCGTTTTCTTACTG                                                                                                                                          <  2:468698/93‑1                                                                                                                            CTGTTTTCTTACTGGGGTTGGGTTGAACCGCGGATGATCAGGTTGGCCTTGAAGTCGATGCGCCGGGCTGCGCCGCTGTCGCCGCGCAAGCGACCGAGCAGGCTTTCGAAGGCCGCCACGCCGATACGCTCGGTGGGCTGGGCCAGTGCG  >  2:284844/1‑150                                                                                                                                                                                                                                                                                   TCGAAAGCCTGCTCGGTCGCTTGCGCGGCGACAGCGGCGCAGCCCGGCGCATCGACTTCAAGGCCAACCTGATCATCCGCGGTTCAACCCAACCCCAGTAAGAAAACGGCAGGCTTGCGCCTGCTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3825169‑3825042 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttTTCTTACTGGGGTTGGGTTGAACCGCGGATGATCAGGTTGGCCTTGAAGTCGATGCGCCGGGCTGCGCCGCTGTCGCCGCGCAAGCGACCGAGCAGGCTTTCGAAGGCCGCCACGCCGATACGCTCGGTGGGCTGGGCCAGTGCG  >  NC_002947/3825066‑3825210

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.