| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3825042 = | 19 (0.640) | 3 (0.100) | 3/240 | NT | 14.1% | intergenic (‑38/+27) | kguE/ptxS | epimerase/2‑ketogluconate utilization repressor |
| ? | NC_002947 | 3825066 = | 18 (0.620) | intergenic (‑62/+3) | kguE/ptxS | epimerase/2‑ketogluconate utilization repressor | |||||
GGCTGACGCCAGCGGCTGCCAGCAGGTCCAGAAACTGCTCCTGGCCACGTTGGCGCACAAAGTCGGCGCCGTAGCTGGAGAGACTGATGGAAACGGGGTTCGCTTGCATTGTTCTTGTCCTTATGAAACCGGTTTCATTTTTGATCAACAGCAGGCGCAAGCCTGCCGTTTTCTTACTGGGGTTGGGTTGAACCGCGGATGATCAGGTTGGCCTTGAAGTCGATGCGCCGGGCTGCGCCGCTGTCGCCGCGCAAGCGACCGAGCAGGCTTTCGAAGGCCGCCACGCC > NC_002947/3824896‑3825182 | ggCTGACGCCAGCGGCTGCCAGCAGGTCCAGAAACTGCTCCTGGCCACGTTGGCGCACAAAGTCGGCGCCGTAGCTGGAGAGACTGATGGAAACGGGGTTCGCTTGCATTGTTCTTGTCCTTATGAAACCGGTTTCATTTTTGATCAAca > 1:57726/1‑150 (MQ=255) cgcactggcccagcccaccgagcgtatcggcgtggcggccttcgaaagcctgctcggtcgcttgcgcggcgacagcggcgcagcccggcgcatcgacttcaaggccaacctgatcatccgcggttcaacccaaccccagtaagaaAAcag > 2:284844‑M1/146‑150 (MQ=255) gTCCAGAAACTGCTCCTGGCCACGTTGGCGCACAAAGTCGGCACCGTTCCAGGAGAGACTGATGGAAACGGGGTTCGCTTGCATTGTTCTTGTCCTTATGAAACCGGTTTCATTTTTGATCAACAGCAGGCGCAAGCCTGCCGTTTTCtt > 1:536677/1‑150 (MQ=255) tCCAGAAACTGCTCCTGGCCACGTTGGCGCACAAAGTCGGCGCCGTAGCTGGAGAGACTGATGGAAACGGGGTTCGCTTGCATTGTTCTTGTCCTTATGAAACCGGTTTCATTTTTGATCAACAGCAGGCGCAAGCCTGCCGTTTTCTTa < 2:308106/150‑1 (MQ=255) tCCAGAAACTGCTCCTGGCCACGTTGGCGCACAAAGTCGGCGCCGTAGCTGGAGAGACTGATGGAAACGGGGTTCGCTTGCATTGTTCTTGTCCTTATGAAACCGGTTTCATTTTTGATCAACAGCAGGCGCAAGCCTGCCGTTTTCTTa > 2:196312/1‑150 (MQ=255) ggCCACGTTGGCGCACAAAGTCGGCGCCGTAGCTGGAGAGACTGATGGAAACGGGGTTCGCTTGCATTGTTCTTGTCCTTATGAAACCGGTTTCATTTTTGATCAACAGCAGGCGCAAGCCTGCCGTTTTCTTACTGGGGTTGGGTTGaa < 1:196312/150‑1 (MQ=255) cACGTTGGCGCACAAAGTCGGCGCCGTAGCTGGAGAGACTGATGGAAACGGGGTTCGCTTGCATTGTTCTTGTCCTTATGAAACCGGTTTCATTTTTGATCAACAGCAGGCGCAAGCCTGCCGTTTTCTTACTGGGGTTGGGTTGAACcg < 1:202520/150‑1 (MQ=255) cacaAAGTCGGCGCCGTAGCTGGAGAGACTGATGGAAACGGGGTTCGCTTGCATTGTTCTTGTCCTTATGAAACCGGTTTCATTTTTGATCAACAGCAGGCGCAAGc > 2:561684/1‑107 (MQ=255) cacaAAGTCGGCGCCGTAGCTGGAGAGACTGATGGAAACGGGGTTCGCTTGCATTGTTCTTGTCCTTATGAAACCGGTTTCATTTTTGATCAACAGCAGGCGCAAGc < 1:561684/107‑1 (MQ=255) tGGAGAGACTGATGGAAACGGGGTTCGCTTGCATTGTTCTTGTCCTTATGAAACCGGTTTCATTTTTGATCAACAGCAGGCGCAAGCCTGCCGTTTTCTTACTGGGGTTGGGTTGAACCGCGGATGATCAGGTTGGCCTTGAAGTCGATg > 1:687567/1‑150 (MQ=255) cTGATGGAAACGGGGTTCGCTTGCATTGTTCTTGTCCTTATGAAACCGGTTTCATTTTTGATCAACAGCAGGCGCAAGCCTGCCGTTTTCTTACTGGGGTTGGGTTGAACCGCGGATGATCAGGTTGGCCTTGAAGTCGATGCGCCGGGc < 2:536677/150‑1 (MQ=255) aTGGAAACGGGGTTCGCTTGCATTGTTCTTGTCCTTATGAAACCGGTTTCATTTTTGATCAACAGCAGGCGCAAGCCTGCCGTTTTCTTACTGGGGTTGGGTTGAACCGCGGATGATCAGGTTGGCCTTGaa < 1:767180/132‑1 (MQ=255) aTGGAAACGGGGTTCGCTTGCATTGTTCTTGTCCTTATGAAACCGGTTTCATTTTTGATCAACAGCAGGCGCAAGCCTGCCGTTTTCTTACTGGGGTTGGGTTGAACCGCGGATGATCAGGTTGGCCTTGaa > 2:767180/1‑132 (MQ=255) gTTCGCTTGCATTGTTCTTGTCCTTATGAAACCGGTTTCATTTTTGATCAACAGCAGGCGCAAGCCTGCCGTTTTCTTACTGGGGTTGGGTTGAACCGCGGATGATCAGGTTGGCCTTGAAGTCGATGCGCCGGGCTGCGCCGCTGTcgc > 2:455548/1‑150 (MQ=255) aTTGTTCTTGTCCTTATGAAACCGGTTTCATTTTTGATCAACAGCAGGCGCAAGCCTGCCGTTTTCTTACTGGGGTTGGGTTGAACCGCGGATGATCAGGTTGGCCTTGAAGTCGATGCGCCGGGCTGGGGCGCTGTCGCCGCGCAAGCg > 1:166087/1‑150 (MQ=255) ttATGAAACCGGTTTCATTTTTGATCAACAGCAGGCGCAAGCCTGCCGTTTTCTTACTGGGGTTGGGTTGAACCGCGGATGATCAGGTTGGCCTTGAAGTCGATGCGCCGGGCTGcgccg < 2:421339/120‑1 (MQ=255) ttATGAAACCGGTTTCATTTTTGATCAACAGCAGGCGCAAGCCTGCCGTTTTCTTACTGGGGTTGGGTTGAACCGCGGATGATCAGGTTGGCCTTGAAGTCGATGCGCCGGGCTGcgccg > 1:421339/1‑120 (MQ=255) ttATGAAACCGGTTTCATTTTTGATCAACAGCAGGCGCAAGCCTGCCGTTTTCTTACTGGGGTTGGGTTGAACCGCGGATGATCAGGTTGGCCTTGAAGTCGATGCGCCGGGCTGCGCCGCTGTCGCCGCGCAAGCGACCGAGCAGGCtt > 1:169698/1‑150 (MQ=255) ttcaacccaaccccagtaagaaAACGGCAGGCTTGCGCCTGCTGTTTTCTTACTGGGGTTGGGTTGAACCGCGGATGATCAGGTTGGCCTTGAAGTCGATGCGCCGGGCTGCGCCGCTGTCGCCGCGCAAGCGACCGAGCAGGCTTTCGa < 1:538351‑M1/128‑1 (MQ=255) ccGGTTTCATTTTTGATCAACAGCAGGCGCAAGCCTGCCGTTTTCTTACTGGGGTTGGGTTGAACCGCGGATGATCAGGTTGGCCTTGAAGTCGATGCGCCGGGCTGCGCCGCTGTCGCCGCGCAAGCGACCGAGCAGGCTTTCGAAGgc < 2:681123/150‑1 (MQ=255) aTTTTTGATCAACAGCAGGCGCAAGCCTGCCGTTTTCTTACTGGGGTTGGGTTGAACCGCGGATGATCAGGTTGGCCTTGAAGTCGATGCGCCGGGCTGCGCCGCTGTCGCCGCGCAAGCGACCGAGCAGGCTTTCGAAGGCCGCCACGc > 2:491463/1‑150 (MQ=255) tttttGATCAACAGCAGGCGCAAGCCTGCCGTTTTCTTACTGGGGTTGGGTTGAACCGCGGATGATCAGGTTGGCCTTGAAGTCGATGCGCCGGGCTGCGCCGCTGTCGCCGCGCAAGCGACCGAGCAGGCTTTCGAAGGCCGCCACGcc > 1:276690/1‑150 (MQ=255) cagtaagaaAACGGCAGGCTTGCGCCTGCTGTTTTCTTACTGGGGTTGGGTTGAACCGCGGATGATCAGGTTGGCCTTGAAGTCGATGCGCCg > 1:468698‑M1/10‑93 (MQ=255) cagtaagaaAACGGCAGGCTTGCGCCTGCTGTTTTCTTACTGGGGTTGGGTTGAACCGCGGATGATCAGGTTGGCCTTGAAGTCGATGCGCCg < 2:468698‑M1/84‑1 (MQ=255) | GGCTGACGCCAGCGGCTGCCAGCAGGTCCAGAAACTGCTCCTGGCCACGTTGGCGCACAAAGTCGGCGCCGTAGCTGGAGAGACTGATGGAAACGGGGTTCGCTTGCATTGTTCTTGTCCTTATGAAACCGGTTTCATTTTTGATCAACAGCAGGCGCAAGCCTGCCGTTTTCTTACTGGGGTTGGGTTGAACCGCGGATGATCAGGTTGGCCTTGAAGTCGATGCGCCGGGCTGCGCCGCTGTCGCCGCGCAAGCGACCGAGCAGGCTTTCGAAGGCCGCCACGCC > NC_002947/3824896‑3825182 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |