| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4266591 | 36 (1.220) | 6 (0.240) | 6/212 | NT | 15.4% | intergenic (‑89/+57) | PP_3738/galP‑IV | transcriptional regulator VanR/porin‑like protein |
| ? | NC_002947 | = 4266628 | 35 (1.380) | intergenic (‑126/+20) | PP_3738/galP‑IV | transcriptional regulator VanR/porin‑like protein | |||||
CGCCGGCCGCCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4266430‑4266591‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggttcacccgcgaaCACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAACAGGCCTGCAGCAACCCCTCGGCTTGCGCTAAGATGCCCGCTCATGTCTTTGGAAGTCGCCTGGATGAGCAAACCCG < NC_002947/4266628‑4266490 CGCCGGCCGCCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGG < 1:709215/150‑1 CGGCCGCCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTC < 1:334918/150‑1 CGGCCGCCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTC > 1:375816/1‑150 CCGCCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGAGACTTCGAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACC < 2:114273/150‑1 TCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGG > 1:245876/1‑95 TCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGG < 2:245876/95‑1 GGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTACTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGG > 1:161840/1‑144 GGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTACTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGG < 2:161840/144‑1 ATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGGGCGGGTTCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTA > 2:346174/1‑150 CAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGT > 1:570547/1‑123 CAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGT < 2:570547/123‑1 GACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGGGCGGGTTCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTTCTTCGCGGGTGAACCCGCTCCTACAACAGGCCTGCAGCAAC < 1:346174/150‑1 GGTTCACCCGCGAACGCCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAACAGGCCTGCAGCAACCCCTCGGCTTGCGCTAAGATGCCCGCTCATGTCTTTGGAAGTCGCCTGGATGAGCAAAC < 2:556315/150‑1 TCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAACAGGCCTGCAGCAACCCCTCGGCTTGCGCTAAGATGCCCGCTCATGTCTTTGGAAGTCGCCTGGATGAGCAAACCCG < 1:320035/150‑1 CCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAACAGGCCTGCA < 1:666736/79‑1 CCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAACAGGCCTGCA > 2:666736/1‑79 CGCCGGCCGCCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4266430‑4266591‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggttcacccgcgaaCACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAACAGGCCTGCAGCAACCCCTCGGCTTGCGCTAAGATGCCCGCTCATGTCTTTGGAAGTCGCCTGGATGAGCAAACCCG < NC_002947/4266628‑4266490 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |