New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4266591	36 (1.220)	6 (0.240)	6/212	NT	15.4%	intergenic (‑89/+57)	PP_3738/galP‑IV	transcriptional regulator VanR/porin‑like protein
	?	NC_002947	= 4266628	35 (1.380)					intergenic (‑126/+20)	PP_3738/galP‑IV	transcriptional regulator VanR/porin‑like protein

GCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCA  >  NC_002947/4266446‑4266730                                                                                                                                                  |                                                                                                                                            gCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAg                                                                                                                                         <  2:761519/150‑1 (MQ=255) gCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAg                                                                                                                                         >  2:399918/1‑150 (MQ=255)                 ttGCGCAACGCAACCAGCACCATCTGACCCGGACCCCGTTTGCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATgg                                                                                                                         <  2:585302/150‑1 (MQ=255)                   gcgcAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAAGATTGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGcc                                                                                                                       >  1:439695/1‑149 (MQ=255)                         cgcaacCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGc                                                                                                                  >  1:310436/1‑149 (MQ=255)                         cgcaacCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGc                                                                                                                  <  2:310436/149‑1 (MQ=255)                              ccAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACa                                                                                                                            <  1:638169/134‑1 (MQ=255)                              ccAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACa                                                                                                                            >  2:638169/1‑134 (MQ=255)                                             cGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGttcgcgggtga                                                                                             <  1:320035‑M2/150‑12 (MQ=255)                                               ggTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTACTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAcaccggcgcagccggtgccatgttccgcgttgcctgcttcgcgg                                                                                                 >  1:161840‑M1/1‑100 (MQ=255)                                               ggTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTACTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAcaccggcgcagccggtgccatgttccgcgttgcctgcttcgcgg                                                                                                 <  2:161840‑M1/144‑45 (MQ=255)                                                gTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGCGttcgcgggtgaacc                                                                                          <  2:556315‑M2/150‑15 (MQ=255)                                                     cTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTCCGCCGGTGTTCGCGGGTGAACCCGccc                                                                                     >  2:608343/1‑150 (MQ=255)                                                      tCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCTCAAGCCGAGGGGTTGCTGCAGGCCTTTGGTAGGAGGGGGCTGTCTTGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTATCGGTGGAACCCGcccc                                                                                    >  1:454442/1‑150 (MQ=255)                                                      tCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGcccc                                                                                    >  1:790849/1‑150 (MQ=255)                                                        aTCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGGGCGGGTTCACCCGCGAAcaccggcgcagccggtgccatgttccgcgttgcctgcttcgcgggtgaacccgctccta                                                                                  >  2:346174‑M1/1‑91 (MQ=255)                                                        aTCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTa                                                                                  <  2:417180/150‑1 (MQ=255)                                                         tCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTAc                                                                                 >  1:563348/1‑150 (MQ=255)                                                            aGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGCACCCGCCCCTACAAg                                                                              >  2:556568/1‑150 (MQ=255)                                                                   ttCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCg                                                                       <  2:790849/150‑1 (MQ=255)                                                                      cAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAcaccggcgcagccggtgccatgttccgcgttgcctgcttcgcgggt                                                                                               <  2:570547‑M1/123‑47 (MQ=255)                                                                      cAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAcaccggcgcagccggtgccatgttccgcgttgcctgcttcgcgggt                                                                                               >  1:570547‑M1/1‑77 (MQ=255)                                                                       aaaGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATa                                                                   >  1:260921/1‑150 (MQ=255)                                                                        aaGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAg                                                                  >  2:216259/1‑150 (MQ=255)                                                                         aGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGctatccgc                                                                 <  2:375816/150‑8 (MQ=255)                                                                          gACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGGGCGGGTTCACCCGCGAAcaccggcgcagccggtgccatgttccgcgttgccttcttcgcgggtgaacccgctcctacaacaggcctgcagcaac                                                                <  1:346174‑M1/150‑78 (MQ=255)                                                                           aCATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGATGGGGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTg                                                               >  1:41962/1‑150 (MQ=255)                                                                            cATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGa                                                              <  2:563348/150‑1 (MQ=255)                                                                             aTGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAg                                                                                                                                         >  1:70200/1‑74 (MQ=255)                                                                             aTGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAg                                                                                                                                         <  2:70200/74‑1 (MQ=255)                                                                                   gggCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGGCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAg                                                       >  1:392564/1‑150 (MQ=255)                                                                                              cgcAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGt                                            <  2:320035/150‑1 (MQ=255)                                                                                               gcAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTc                                           >  2:595150/1‑150 (MQ=255)                                                                                                 aaGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCga                                         <  2:454442/150‑1 (MQ=255)                                                                                                           gTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGAAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGttcgcgggtgaacccgcccctacaacaggcctgcagcaacccctcggcttgcgctaagatgcccgctcatgtc                               <  1:346174‑M2/150‑74 (MQ=255)                                                                                                            ttGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTg                              >  1:576759/1‑150 (MQ=255)                                                                                                             tgctgcAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGa                             <  2:260921/150‑1 (MQ=255)                                                                                                                tgcAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGttcgcgg                                                                                                 <  1:666736‑M2/79‑8 (MQ=255)                                                                                                                tgcAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGttcgcgg                                                                                                 >  2:666736‑M2/1‑72 (MQ=255)                                                                                                                     gcatgttgtAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGa                                                              <  2:131276/106‑1 (MQ=255)                                                                                                                     gCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCTGATATCTGACGATCAg                                                       <  2:195966/116‑1 (MQ=255)                                                                                                                     gCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGa                                                              >  1:131276/1‑109 (MQ=255)                                                                                                                     gCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATc                                                         <  1:21125/114‑1 (MQ=255)                                                                                                                     gCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATc                                                         >  2:21125/1‑114 (MQ=255)                                                                                                                     gCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAg                                                       >  1:195966/1‑116 (MQ=255)                                                                                                                     gCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTgcgc                     >  1:453159/1‑150 (MQ=255)                                                                                                                       cTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCg                   >  1:350634/1‑150 (MQ=255)                                                                                                                           tgtAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTg               <  2:350634/150‑1 (MQ=255)                                                                                                                             tAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGttcgcgggtgaacccgcccctacaacaggcctgcagcaacccctcggcttgcgctaagatgcccgctcatgtctttggaagtcgcctggat             >  2:346174‑M2/1‑59 (MQ=255)                                                                                                                                   ggggTGCACCCGCGAAGCAGGCAACGCGGAACATGCCACCGGCTGCGCCGGTGTTCGCGGGTGAGCCCGCCCCTACAACGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCgtt       <  2:439695/149‑1 (MQ=255)                                                                                                                                     ggTTCACCCGCGAAcgccggcgcagccggtgccatgttccgcgttgcctgcttcgcgggtgaacccgctcctacaacaggcctgcagcaacccctcggcttgcgctaagatgcccgctcatgtctttggaagtcgcctggatgagcaaac     <  2:556315‑M1/150‑137 (MQ=255)                                                                                                                                        tCACCCGCGAAcaccggcgcagccggtgccatgttccgcgttgcctgcttcgcgggtgaacccgctcctacaacaggcctgcagcaacccctcggcttgcgctaagatgcccgctcatgtctttggaagtcgcctggatgagcaaacccg  <  1:320035‑M1/150‑140 (MQ=255)                                                                                                                                          aCCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGttcgcgggtgaacccgctcctacaacaggcctgcagcaacccctcggcttgcgctaagatgcccgctcatgtctttg                           <  2:570547‑M2/123‑78 (MQ=255)                                                                                                                                          aCCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGttcgcgggtgaacccgctcctacaacaggcctgcagcaacccctcggcttgcgctaagatgcccgctcatgtctttg                           >  1:570547‑M2/1‑46 (MQ=255)                                                                                                                                            ccGCGAAcaccggcgcagccggtgccatgttccgcgttgcctgcttcgcgggtgaacccgctcctacaacaggcctgca                                                                     >  2:666736‑M1/1‑7 (MQ=255)                                                                                                                                            ccGCGAAcaccggcgcagccggtgccatgttccgcgttgcctgcttcgcgggtgaacccgctcctacaacaggcctgca                                                                     <  1:666736‑M1/79‑73 (MQ=255)                                                                                                                                            ccGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGttcgcgggtgaacccgctcctacaacaggcctgcagtaacccctcggcttgcgctaagatgcccgctcatgtctttggaagtcgcctggatgagcaaacc    <  2:161840‑M2/144‑101 (MQ=255)                                                                                                                                            ccGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGttcgcgggtgaacccgctcctacaacaggcctgcagtaacccctcggcttgcgctaagatgcccgctcatgtctttggaagtcgcctggatgagcaaacc    >  1:161840‑M2/1‑44 (MQ=255)                                                                                                                                            ccGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTgg                                             <  2:654815/103‑1 (MQ=255)                                                                                                                                            ccGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAATTCAGCGGATAGCTGACGATCAGGCGCGTCTgg                                             >  1:654815/1‑103 (MQ=255)                                                                                                                                                  |                                                                                                                                            GCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCA  >  NC_002947/4266446‑4266730

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.