New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4282133 = | 33 (1.120) | 6 (0.220) | 6/230 | NT | 14.3% | intergenic (‑666/+52) | PP_3751/PP_3753 | cyanate transporter/AraC family transcriptional regulator |
? | NC_002947 | 4282196 = | 41 (1.480) | coding (1078/1089 nt) | PP_3753 | AraC family transcriptional regulator |
GGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGGCTTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4282190‑4282133 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgaaCACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTAGCTCCCTGGGCTCTGCCCGGTCCACTTCTT > NC_002947/4282196‑4282319 GGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGGCTTGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTA > 1:4596/1‑123 GGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGGCTTGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTA < 2:4596/123‑1 CCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGC > 1:403158/1‑63 CCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGC < 2:403158/63‑1 CTACAGGGCACGCCCAGAATTGTAGGAGCGGGCTTGCCCGCGAACACCGGCAGAGCCGGTGC > 1:376487/1‑62 CTACAGGGCACGCCCAGAATTGTAGGAGCGGGCTTGCCCGCGAACACCGGCAGAGCCGGTGC < 2:376487/62‑1 CCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTAGCTCCCTGGGCTCTGCCCGGTCCACTTCTT > 1:592967/1‑131 CCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTAGCTCCCTGGGCTCTGCCCGGTCCACTTCTT < 2:592967/131‑1 GGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGGCTTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4282190‑4282133 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgaaCACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTAGCTCCCTGGGCTCTGCCCGGTCCACTTCTT > NC_002947/4282196‑4282319 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |