New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4282133 =	33 (1.120)	6 (0.220)	6/230	NT	14.3%	intergenic (‑666/+52)	PP_3751/PP_3753	cyanate transporter/AraC family transcriptional regulator
	?	NC_002947	4282196 =	41 (1.480)					coding (1078/1089 nt)	PP_3753	AraC family transcriptional regulator

TATGAAGCCCTGCAGGAACACTTCGAGCCGGGCGAGGTGGCCAACCTGACCTTGGCAATTGCCACCATCAATGCCTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGA  >  NC_002947/4281989‑4282273                                                                                                                                                 |                                                                                                                                             tatGAAGCCCTGCAGGAACACTTCGAGCCGGGCGAGGTGGCCAACCTGACCTTGGCAATTGCCACCATCAATGCCTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTcgcg                                                                                                                                         >  1:745129/1‑150 (MQ=255)         ccTGCAGGAACACTTCGAGCCGGGCGAGGTGGCCAACCTGACCTTGGCAATTGCCACCATCAATGCCTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGcc                                                                                                                                 >  2:405820/1‑150 (MQ=255)         ccTGCAGGAACACTTCGAGCCGGGCGAGGTGGCCAACCTGACCTTGGCAATTGCCACCATCAATGCCTGGAACCGGTTCGGCGTAGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGcc                                                                                                                                 >  1:270809/1‑150 (MQ=255)           ttcAGGAACACTTCGAGCCGGGCGAGGTGGCCAACCTGACCTTGGCAATTGCCACCATCAATGCCTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCg                                                                                                                               >  2:640732/3‑150 (MQ=255)                gAACACTTCGAGCCGGGCGAGGTGGCCAACCTGACCTTGGCAATTGCCACCATCAATGCCTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATACGCGGGCAAGCCCGCTCCt                                                                                                                          >  2:798/1‑150 (MQ=255)                     aagaagtggaccgggcagagcccagggagctaccgggcgcggctggtcggcctgcgttctacctgtaggagcgggcatgcccgcgaagaaaccaccgcggtggatggcaccggctctgccggtgTTCGCgg                                                                                                                                        <  2:592967‑M1/7‑1 (MQ=255)                     aagaagtggaccgggcagagcccagggagctaccgggcgcggctggtcggcctgcgttctacctgtaggagcgggcatgcccgcgaagaaaccaccgcggtggatggcaccggctctgccggtgTTCGCgg                                                                                                                                        >  1:592967‑M1/125‑131 (MQ=255)                      ttCGAGCCGGGCGAGGTGGCCAACCTGACCTTGGCAATTGCCACCATCAATGCCTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAAtt                                                                                                                    >  1:741333/1‑150 (MQ=255)                           gCCGGGCGAGGTGGCCAACCTGACCTTGGCAATTGCCACCATCAATGCCTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTggg                                                                                                               >  1:450346/1‑150 (MQ=255)                                             ccTGACCTTGGCAATTGCCACCATCAATGCCTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATGCTGGGCGTGCCCTGTAGGAGCgg                                                                                             <  2:382543/150‑1 (MQ=255)                                                   cTTGGCAATTGCCACCATCAATGCCTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTACCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCTCTGTAGGAGCGGGTTTAc                                                                                       >  1:215627/1‑150 (MQ=255)                                                                  caTCAATGCCTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACCGGct                                                                        >  1:467207/1‑149 (MQ=255)                                                                   aTCAATGCCTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTAc                                                                                       <  2:771881/134‑1 (MQ=255)                                                                   aTCAATGCCTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTAc                                                                                       >  1:771881/1‑134 (MQ=255)                                                                       aTGCCTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGcc                                                                   >  1:168451/1‑150 (MQ=255)                                                                       aTGCCTGGAACCGGTTCGGCGTAGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATGCTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGcc                                                                   <  2:270809/150‑1 (MQ=255)                                                                          ccTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGt                                                                <  1:405820/150‑1 (MQ=255)                                                                           cTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTg                                                               >  1:89783/1‑150 (MQ=255)                                                                           cTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTAACCCGCGAACACCGGCAGAGCCGGTg                                                               >  2:206282/1‑150 (MQ=255)                                                                                tacctgtaggagcgggcatgcccgcgaagaaaccaccgcggtggatggcaccggctctgccggtgTTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTAccc                                                                                     <  2:4596‑M1/58‑1 (MQ=255)                                                                                tacctgtaggagcgggcatgcccgcgaagaaaccaccgcggtggatggcaccggctctgccggtgTTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTAccc                                                                                     >  1:4596‑M1/66‑123 (MQ=255)                                                                                  cGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACCGGCTCTGCCGGTgttcgcgg                                                        <  2:467207/150‑8 (MQ=38)                                                                                          cGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCggtg                                                >  2:236133/1‑150 (MQ=255)                                                                                              ggCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGttt                                            >  1:636193/1‑150 (MQ=255)                                                                                                 tttGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTttctt                                         >  2:193762/1‑150 (MQ=255)                                                                                                 tttGCCATGGTGCCGGCCAGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTTTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGAGAACACCTGCAGACCCGTTTCCATCCACCGCGGTGGTttctt                                         >  2:288184/1‑150 (MQ=38)                                                                                                                gCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGc                                                              <  2:786856/114‑1 (MQ=255)                                                                                                                gCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGc                                                              >  1:786856/1‑114 (MQ=255)                                                                                                                gCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGc                          <  2:161662/150‑1 (MQ=255)                                                                                                                   tGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTTGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCAGGCCCGCTcc                       >  2:352205/1‑150 (MQ=255)                                                                                                                   tGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTcc                       >  1:545168/1‑150 (MQ=255)                                                                                                                        cTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCGCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGACGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAg                  <  2:741333/150‑1 (MQ=255)                                                                                                                          ttCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGt                >  2:183174/1‑150 (MQ=255)                                                                                                                               gcaccggctctgccggtgTTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAg                                                                                                   >  1:376487‑M1/19‑62 (MQ=255)                                                                                                                               gcaccggctctgccggtgTTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAg                                                                                                   <  2:376487‑M1/44‑1 (MQ=255)                                                                                                                                tGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACa                   >  1:525934/1‑141 (MQ=255)                                                                                                                                tGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACa                   <  2:525934/141‑1 (MQ=255)                                                                                                                                   ccTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTAACGTGCTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAg       <  1:640732/150‑1 (MQ=255)                                                                                                                                     gctctgccggtgTTCGCGGGTAAACCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCggg                                                                                            <  2:403158‑M1/51‑1 (MQ=255)                                                                                                                                     gctctgccggtgTTCGCGGGTAAACCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCggg                                                                                            >  1:403158‑M1/13‑63 (MQ=255)                                                                                                                                        gCTGGCCTATACGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGa  <  1:798/150‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                             TATGAAGCCCTGCAGGAACACTTCGAGCCGGGCGAGGTGGCCAACCTGACCTTGGCAATTGCCACCATCAATGCCTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGA  >  NC_002947/4281989‑4282273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.