New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4376055 =	26 (0.880)	4 (0.150)	4/224	NT	13.9%	intergenic (‑43/+73)	PP_3851/PP_3852	hypothetical protein/BNR domain‑containing protein
	?	NC_002947	4376085 =	26 (0.970)					intergenic (‑73/+43)	PP_3851/PP_3852	hypothetical protein/BNR domain‑containing protein

CATCGCCAAGGTCAATGAACATGAGATCACCTCTGGAAAAAGCGCGCCTTCTGTCAAAGTCGTCAGCGATCCAGCAAGTCTCTAGGGATTAGCAGTGAATCTATGTGTCTTGTAGCCACACAAAAAACGAAGCCCTGGATGCTGGTCTCCAGGGCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4376212‑4376055 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccagggcttcGTTTTTTGTGTGGCTACAAGACACATAGATTCACTGCTAATCCCTAGAGACTTGCTGGATCGCTGACGACTTTGACAGAAGGCGCGCTTTTTCCAGAGGTGATCTCATGTTCATTGACCTTGGCGATGCGAATCTGCTTGTG  >  NC_002947/4376085‑4376226                                                                                                                                                                                                                                                                                                              CATCGCCAAGGTCAATGAACATGAGATCACCTCTGGAAAAAGCGCGCCTTCTGTCAAAGTCGTCAGCGATCCAGCAAGTCTCTAGGGATTAGCAGTGAATCTATGTGTCTTGTAGCCACACAAAAAACGAAGCCCTGGATGCTGGTCTCC                                                                                                                                                        <  2:379313/150‑1       CAAGGTCAATGAACATGAGATCACCTCTGGAAAAAGCGCGCCTTCTGTCAAAGTCGTCAGCGATCCAGCAAGTCTCTAGGGATTAGCAGTGAATCTATGTGTCTTGTAGCCACACAAAAAACGAAGCCCTGGATGCTGGTCTCCAGGGCT                                                                                                                                                  <  1:494152/150‑1                                                                                  CTAGGGATTAGCAGTGAATCTATGTGTCTTGTAGCCACACAAAAAACGAAGCCCTGGAGACCAGCATCCAGGGCTTCGTTTTTTGTG                                                                                                                                      >  1:203909/1‑87                                                                                  CTAGGGATTAGCAGTGAATCTATGTGTCTTGTAGCCACACAAAAAACGAAGCCCTGGAGACCAGCATCCAGGGCTTCGTTTTTTGTG                                                                                                                                      <  2:203909/87‑1                                                                                                                                      CCTGGATGCTGGTCTCCAGGGCTTCGTTTTTTGTGT                                                                                                                                     <  1:623153/36‑1                                                                                                                                      CCTGGATGCTGGTCTCCAGGGCTTCGTTTTTTGTGT                                                                                                                                     >  2:623153/1‑36                                                                                                                                                    TCCAGGGCTTCGTTTTTTGTGTGGCTACAAGACACATAGATTCACTGCTAATCCCTAGAGACTTGCTGGATCGCTGACGACTTTGACAGAAGGCGCGCTTTTTCCAGAGGTGATCTCATGTTCATTGACCTTGGCGATGCGAATCTGCTT     <  1:379313/150‑1                                                                                                                                                    TCCAGGGCTTCGTTTTTTGTGTGGCTACAAGACACATAGATTCACTGCTAATCCCTAGAGACTTGCTGGATCGCTGACGACTTTGACAGAAGGCGCGCTTTTTCCAGAGGTGATCTCATGTTCATTGACCTTGGCGATGCGAATCTGCTT     <  1:433699/150‑1                                                                                                                                                      CAGGGCTTCGTTTTTTGTGTGGCTACAAGACACATAGATTCACTGCTAATCCCTAGAGACTTGCTGGATCGCTGACGACTTTGACAGAAGGCGCGCTTTTTCCAGAGGTGATCTCATGTTCATTGACCTTGGCGATGCGAATCTGCTTGT   <  1:147271/150‑1                                                                                                                                                       AGGGCTTCGTTTTTTGTGTGGCTACAAGACACATAGATTCACTGCTAATCCCTAGAGACTTGCTGGATCGCTGACGACTTTGACAGAAGGCGCGCTTTTTCCAGAGGTGATCTCATGTTCATTGACCTTGGCGATGCGAATCTGCTTGTG  <  1:54372/150‑1                                                                                                                                                                                                                                                                                                              CATCGCCAAGGTCAATGAACATGAGATCACCTCTGGAAAAAGCGCGCCTTCTGTCAAAGTCGTCAGCGATCCAGCAAGTCTCTAGGGATTAGCAGTGAATCTATGTGTCTTGTAGCCACACAAAAAACGAAGCCCTGGATGCTGGTCTCCAGGGCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4376212‑4376055 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccagggcttcGTTTTTTGTGTGGCTACAAGACACATAGATTCACTGCTAATCCCTAGAGACTTGCTGGATCGCTGACGACTTTGACAGAAGGCGCGCTTTTTCCAGAGGTGATCTCATGTTCATTGACCTTGGCGATGCGAATCTGCTTGTG  >  NC_002947/4376085‑4376226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.