| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4376055 = | 26 (0.880) | 4 (0.150) | 4/224 | NT | 13.9% | intergenic (‑43/+73) | PP_3851/PP_3852 | hypothetical protein/BNR domain‑containing protein |
| ? | NC_002947 | 4376085 = | 26 (0.970) | intergenic (‑73/+43) | PP_3851/PP_3852 | hypothetical protein/BNR domain‑containing protein | |||||
GTCCAAATGCCATGCCTTGTTCAGTTGATCGCCTGAGTATAGGACGGCTTGTGGGTATACAGAACGGGAACTGCGGGTGACTCTAAGGGCTCGCACTGATACCATCTGGACACGCTAGCTTGCCATTCATAGGGACCAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGTTTTTTGTGTGGCTACAAGACACATAGATTCACTGCTAATCCCTAGAGACTTGCTGGATCGCTGACGACTTTGACAGAAGGCGCGCTTTTTCCAGAGGTGATCTCATGTT > NC_002947/4375908‑4376195 | gTCCAAATGCCATGCCTTGTTCAGTTGATCGCCTGAGTATAGGACGGCTTGTGGGTATACAGAACGGGAACTGCGGGTGACTCTAAGGGCTCGCACTGATACCATCTGGACACGCTAGCTTGCCATTCATAGGGACCAAGCTAGCTAGaa > 1:351457/1‑150 (MQ=255) tCCAAATGCCATGCCTTGTTCAGTTGATCGCCTGAGTATAGGACGGCTTGTGGGTATACAGAACGGGAACTGCGGGTGACTCTAAGGGCTCGCACTGATACCATCTGGACACGCTAGCTTGCCATTCATAGGGACCAAGCTAGCTAGAAg > 1:714705/1‑150 (MQ=255) cacaagcagattcgcatcgccaaggtcaatgaacatgagatcacctctggaaaaagcgcgccttctgtcaaagtcgtcagcgatccagcaagtctctagggattagcagtgaatctatgtgtcttgtagccacacaaaaaacGAAGCCCt < 1:54372‑M1/8‑1 (MQ=255) acaagcagattcgcatcgccaaggtcaatgaacatgagatcacctctggaaaaagcgcgccttctgtcaaagtcgtcagcgatccagcaagtctctagggattagcagtgaatctatgtgtcttgtagccacacaaaaaacGAAGCCCTg < 1:147271‑M1/9‑1 (MQ=255) aagcagattcgcatcgccaaggtcaatgaacatgagatcacctctggaaaaagcgcgccttctgtcaaagtcgtcagcgatccagcaagtctctagggattagcagtgaatctatgtgtcttgtagccacacaaaaaacGAAGCCCTGga < 1:433699‑M1/11‑1 (MQ=255) aagcagattcgcatcgccaaggtcaatgaacatgagatcacctctggaaaaagcgcgccttctgtcaaagtcgtcagcgatccagcaagtctctagggattagcagtgaatctatgtgtcttgtagccacacaaaaaacGAAGCCCTGga < 1:379313‑M1/11‑1 (MQ=255) ttGATCGCCTGAGTATAGGACGGCTTGTGGGTATACAGAACGGGAACTGCGGGTGACTCTAAGGGCTCGCACTGATACCATCTGGACACGCTAGCTTGCCATTCATAGGGACCAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGc > 2:85386/1‑150 (MQ=255) tGAGTATAGGACGGCTTGTGGGTATACAGAACGGGAACTGCGGGTGACTCTAAGGGCTCGCACTGATACCATCTGGACACGCTAGCTTGCCATTCATAGGGACCAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGttttt < 1:120076/150‑1 (MQ=255) ggACGGCTTGTGGGTATACAGAACGGGAACTGAGGGTGACTCTAAGGGCTCGCACTGATACAATCTGGACACGCTAGCTTGCCATTCATAGGGACCAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGTTTTTTGTGTGGc > 2:242654/1‑150 (MQ=255) gCTTGTGGGTATACAGAACGGGAACTGCGGGTGACTCTAAGGGCTCGCACTGATACCATCTGGACACGCTAGCTTGCCATTCATAGGGACCAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGTTTTTTGTGTGGCTACaa < 2:714705/150‑1 (MQ=255) cGGGAACTGCGGGTGACTCTAAGGGCTCGCACTGATACCATCTGGACACGCTAGCTTGCCATTCATAGGGACCAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGTTTTTTGTGTGGCTACAAGACACATAGATTCACTGc < 2:542340/150‑1 (MQ=255) ctctAAGGGCTCGCACTGATACCATCTGGACACGCTAGCTTGCCATTCATAGGGACCAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGTTTTTTGTGTGGCTACaa > 2:279137/1‑116 (MQ=255) ctctAAGGGCTCGCACTGATACCATCTGGACACGCTAGCTTGCCATTCATAGGGACCAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGTTTTTTGTGTGGCTACaa < 1:279137/116‑1 (MQ=255) ctctAAGGGCTCGCACTGATACCATCTGGACACGCTAGCTTGCCATTCATAGGGACCAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGTTTTTTGTGTGGCTACAAGACACATAGATTCACTGCTAATCCCTAGAGACtt > 2:85101/1‑150 (MQ=255) aaGGGCTCGCACTGATACCATCTGGACACGCTAGCTTGCCATTCATAGGGACCAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGTTTTTTGTGTGGCTACAAGACACATAGATTCACTGCTAATCCCTAGAGACTTGCTg < 1:85386/150‑1 (MQ=255) gggCTTGCATTGATACCGTCTGGACGCGCTAGAGTGCCATTCATAGGGACTAAGCTAGCTAGAAGCCAGGGAGCCCAGCATCCCGGGTGTCGTTTTTTGTGTGGCTACAAGACACATAGATTCGCTGCTAATCCCTAGAGACTTGCTgca < 2:351457/150‑3 (MQ=255) cATCTGGACACGCTAGCTTGCCATTCATAGGGACCAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGTTTTTTGTGTGGCTACAAGACACATAGATTCAc > 1:344687/1‑109 (MQ=255) cATCTGGACACGCTAGCTTGCCATTCATAGGGACCAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGTTTTTTGTGTGGCTACAAGACACATAGATTCAc < 2:344687/109‑1 (MQ=255) aTCTGGACACGCTAGCTTGCCATTCATAGGGACCAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGttttt < 2:241481/80‑1 (MQ=255) aTCTGGACACGCTAGCTTGCCATTCATAGGGACCAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGttttt > 1:241481/1‑80 (MQ=255) aTCTGGACACGCTAGCTTGCCATTCATAGGGACCAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGTTTTTTGTGTGGCTACAAGACACATAGATTCACTg > 1:606356/1‑110 (MQ=255) aTCTGGACACGCTAGCTTGCCATTCATAGGGACCAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGTTTTTTGTGTGGCTACAAGACACATAGATTCACTg < 2:606356/110‑1 (MQ=255) tGGACACGCTAGCTTGCCATTCATAGGGACCAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGTTTTTTGTGTGGCTACAAGACACATAGATTCACTGCTAATCCCTAGAGACTTGCTGGATCGCTGACGACTTTGa > 1:328943/1‑146 (MQ=255) tGGACACGCTAGCTTGCCATTCATAGGGACCAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGTTTTTTGTGTGGCTACAAGACACATAGATTCACTGCTAATCCCTAGAGACTTGCTGGATCGCTGACGACTTTGa < 2:328943/146‑1 (MQ=255) cGCTAGCTTGCCATTCATAGGGACCAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGTTTTTTGTGTGGCTACAAGACACATAGATTCACTGCTAATCCCTAGAGACTTGCTGGATCGCTGACGACTTTGACAGAAGgcgc < 1:85101/150‑1 (MQ=255) cGCTAGCTTGCCATTCATAGGGACCAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGTTTTTTGTGTGGCTACAAGACACATAGATTCACTGCTAATCCCTAGAGACTTGCTGGATCGCTGACGACTTTGACAGAAGgcgc < 2:510788/150‑1 (MQ=255) gCTAGCTTGCCATTCATAGGGACCAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGTTTTTTGTGTGGCTACAAGACACATAGATTCACTGCTAATCCCTAGAGACTTGCTGGATCGCTGACGACTTTGACAGAAGgcgcg > 2:360708/1‑150 (MQ=255) cTAGCTTGCCATTCATAGGGACCAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGTTTTTTGTGTGGCTACAAGACACATAGATTCACTGCTAATCCCTAGAGACTTGCTGGATCGCTGACGACTTTGACAGAAGgcgcgc < 1:360708/150‑1 (MQ=255) aTTCATAGGGACCAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGTTTTTTGTGTGGCTACAAGACACATAGATTCACTGCTAATCCCTAGAGACTTGCTGGATCGCTGACGACTTTGACAGAAGGCGCGCTTTTTCCaga > 2:454019/1‑150 (MQ=255) aCCAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGTTTTTTGTGTGGCTACAAGACACATAGATTCACTGCTAATCCCTAGAGACTTGCTGGATCGCTGACGACTTTGACAGAAGGCGCGCTTTTTCCAGAGGTGATCTCa > 2:54372/1‑150 (MQ=255) cAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGTTTTTTGTGTGGCTACAAGACACATAGATTCACTGCTAATCCCTAGAGACTTGCTGGATCGCTGACGACTTTGACAGAAGGCGCGCTTTTTCCAGAGGTGATCTCATg > 2:474481/1‑150 (MQ=255) acacaaaaaacGAAGCCCTGGAGACCAGCATCCAgg > 2:623153‑M1/12‑36 (MQ=255) acacaaaaaacGAAGCCCTGGAGACCAGCATCCAgg < 1:623153‑M1/25‑1 (MQ=255) cacaaaaaacGAAGCCCTGGATGCTGGTCTCCAGGGCTTCGTTTTTTGTGTGGCTACAAGACACATAGATTCACTGCTAATCCCTag < 2:203909‑M1/77‑1 (MQ=255) cacaaaaaacGAAGCCCTGGATGCTGGTCTCCAGGGCTTCGTTTTTTGTGTGGCTACAAGACACATAGATTCACTGCTAATCCCTag > 1:203909‑M1/11‑87 (MQ=255) agctagctAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGTTTTTTGTGTGGCTACAAGACACATAGATTCACTGCTAATCCCTAGAGACTTGCTGGATCGCTGACGACTTTGACAGAAGGCGCGCTTTTTCCAGAGGTGATCTCATGtt > 2:147271/1‑150 (MQ=255) | GTCCAAATGCCATGCCTTGTTCAGTTGATCGCCTGAGTATAGGACGGCTTGTGGGTATACAGAACGGGAACTGCGGGTGACTCTAAGGGCTCGCACTGATACCATCTGGACACGCTAGCTTGCCATTCATAGGGACCAAGCTAGCTAGAAGCCCTGGAGACCAGCATCCAGGGCTTCGTTTTTTGTGTGGCTACAAGACACATAGATTCACTGCTAATCCCTAGAGACTTGCTGGATCGCTGACGACTTTGACAGAAGGCGCGCTTTTTCCAGAGGTGATCTCATGTT > NC_002947/4375908‑4376195 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |