New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5200454	27 (0.910)	5 (0.180)	4/232	NT	16.5%	coding (597/774 nt)	yafJ	amidotransferase
	?	NC_002947	= 5200465	25 (0.900)					coding (586/774 nt)	yafJ	amidotransferase

TCGCCGTGCCGCCACAGGGCCCACTGACCCGGCGCGTAGCGGTGCCAGGTCTCGTTCTCGGTCAGGGCCTCGGTGGCAATCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5200302‑5200454 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgtgcgCCATTCGGTGCCGCACGGTTGAAGGATGTCGACCTGATCGTCGATTTTCATACCGAAACCACCCCCAACGACGTGGTCACGGTGATTGCCACCGAGGCCCTGACCGAGAACGAGACCTGGCACCGCTACGCGCCGGGTCAGTG  <  NC_002947/5200465‑5200323                                                                                                                                                                                                                                                                                                          TCGCCGTGCCGCCACAGGGCCCACTGACCCGGCGCGTAGCGGTGCCAGGTCTCGTTCTCGGTCAGGGCCTCGGTGGCAATCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGT                                                                                                                                                    >  2:367881/1‑150   GCCGTGCCGCCACAGGGCCCACTGACCCGGCGCGTAGCGGTGCCAGGTCTCGTTCTCGGTCAGGGCCTCGGTGGCAATCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGC                                                                                                                                                  <  1:404348/150‑1   GCCGTGCCGCCACAGGGCCCACTGACCCGGCGCGTAGCGGTGCCAGGTCTCGTTCTCGGTCAGGGCCTCGGTGGCAATCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGC                                                                                                                                                  <  1:404450/150‑1                            CCCGGCGCGTAGCGGTGCCAGGTCTCGTTCTCGGTCAGGGCCTCGGTGGCAATCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGCCATTCGGTGCCGCACGGTTGAAG                                                                                                                         <  1:367881/150‑1                                                                             CAATCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGCCATTCGGTGCCGCACGGTT                                                                                                                             >  1:599538/1‑97                                                                             CAATCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGCCATTCGGTGCCGCACGGTT                                                                                                                             <  2:599538/97‑1                                                                                TCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGCCATTCGGTGCCGCACGGTTGAAG                                                                                                                         >  1:334484/1‑98                                                                                TCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGCCATTCGGTGCCGCACGGTTGAAG                                                                                                                         <  2:334484/98‑1                                                                                                                                                   CCGTGCGCCATTCGGTGCCGCACGGTTGAAGGATGTCGACCTGATCGTCGATTTTCATACCGAAACCACCCCCAACGACGTGGTCACGGTGATTGCCACCGAGGCCCTGACCGAGAACGAGACCTGGCACCGCTACGCGCCGGGTCAGTG  <  2:42256/150‑1                                                                                                                                                                                                                                                                                                          TCGCCGTGCCGCCACAGGGCCCACTGACCCGGCGCGTAGCGGTGCCAGGTCTCGTTCTCGGTCAGGGCCTCGGTGGCAATCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5200302‑5200454 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgtgcgCCATTCGGTGCCGCACGGTTGAAGGATGTCGACCTGATCGTCGATTTTCATACCGAAACCACCCCCAACGACGTGGTCACGGTGATTGCCACCGAGGCCCTGACCGAGAACGAGACCTGGCACCGCTACGCGCCGGGTCAGTG  <  NC_002947/5200465‑5200323

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.