| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5200454 | 27 (0.910) | 5 (0.180) | 4/232 | NT | 16.5% | coding (597/774 nt) | yafJ | amidotransferase |
| ? | NC_002947 | = 5200465 | 25 (0.900) | coding (586/774 nt) | yafJ | amidotransferase | |||||
AGGGCCCACTGACCCGGCGCGTAGCGGTGCCAGGTCTCGTTCTCGGTCAG‑GGCCT‑CGGTGGCAATCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAATGGCGCACGGCGGGTAATGTGCACCAGCTTTGTCGAGCAGAAGCAGAACAGCCAGTCGCCATCGCTGAGCATGCAGTTGAACACCCCCAGATCCCGGTAGCCGGCACAGGCTTCGACCAGCACTGGCAGCAGCTG > NC_002947/5200317‑5200597 | aGGGCCCACTGACCCGGCGCGTAGCGGTGCCCGGTCACGT‑‑TAGTTCAGACGTGTGCTGTTGCAATCACCGTGACAACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAATGgc < 1:178636/150‑1 (MQ=255) cACTGACCCGGCGCGTAGCGGTGCCAGGTCTCGTTCTCGGTCAG‑GGCCT‑CGGTGGCAATCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAATGGcgcacgg < 2:42256‑M2/150‑8 (MQ=255) tGACCCGGCGCGTAGCGGTGCCAGGTCTCGTTCTCGGTCAG‑GGCCT‑CGGTGGCAATCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAATGGCGCAcggcgg < 1:401787/150‑1 (MQ=255) cccGGCGCGTAGCGGTGCCAGGTCTCGTTCTCGGTCAG‑GGCCT‑CGGTGGCAATCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGccattcggtgccgcacggttgaag < 1:367881‑M1/150‑25 (MQ=255) cgcgTAGCGGTGCCAGGTCTCGTTCTCGGTCAG‑GGCCT‑CGGTGGCAATCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAATGGCGCACGGCGGGTAAtgtg < 1:55092/150‑1 (MQ=255) gcgTAGCGGTGCCAGGTCTCGTTCTCGGTCAG‑GGCCT‑CGGTGGCAATCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAATGGCGCACGGCGGGTAATGTGc < 2:476657/150‑1 (MQ=255) gcgTAGCGGTGCCAGGTCTCGTTCTCGGTCAG‑GGCCT‑CGGTGGCAATCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAATGGCGCACGGCGGGTAATGTGc < 1:42256/150‑1 (MQ=255) tGCCAGGTCTCGTTCTCGGTCAG‑GGCCT‑CGGTGGCAATCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAATGGCGCACGGCGGGTAATGTGCACCAGCttt < 1:111726/150‑1 (MQ=255) tGCCAGGTCTCGTTCTCGGTCAG‑GGCCT‑CGGTGGCAATCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAATGGCGCACGGCGGGTAATGTGCACCAGCttt < 1:47403/150‑1 (MQ=255) gTCAG‑GGCCT‑CGGTGGCAATCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAATGGCGCACGGCGGGTAATGTGCACCAGCTTTGTCGAGCAGAAGCAGAAc > 1:233770/1‑150 (MQ=255) ggCCT‑GGGTTGCAATCACCGTGAGCACGTCGTTGGGGGTTGGTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCACCCGGGCGGCAGCGAAGGGCGCACGGCGGGTAATGTGCACCAGCTTTGTCGAGCAGAAGCAGAACAGCCa < 2:76861/150‑1 (MQ=255) ggCCT‑CGGTGGCAATCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAATGGCGCACGGCGGGTAATGTGCACCAGCTTTGTCGAGCAGAATCAGAACAGCCa > 1:130244/1‑150 (MQ=255) t‑CGGTGGCAATCACCGTGACCACTTCGTGGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAATGGCGCACGGCGGGTAATGTGCACCAGCTTTGTCGAGCAGAAGCAGAACAGCCAGTCg > 2:212754/1‑150 (MQ=255) cAATCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGccattcggtgccgcacggtt < 2:599538‑M1/97‑21 (MQ=255) cAATCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGccattcggtgccgcacggtt > 1:599538‑M1/1‑77 (MQ=255) aaTCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAATGGCGCACGGCGGGTAATGTGTACCAGCTTTGTCGa > 1:111468/1‑120 (MQ=255) aaTCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAATGGCGCACGGCGGGTAATGTGTACCAGCTTTGTCGa < 2:111468/120‑1 (MQ=255) tCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGccattcggtgccgcacggttgaag > 1:334484‑M1/1‑74 (MQ=255) tCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGccattcggtgccgcacggttgaag < 2:334484‑M1/98‑25 (MQ=255) ccGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAATGGCGCACGGCGGGTAATGTGCACCAGCTTTGTCGAGCAGAAGCAGAACAGCCAGTCGCCATCGCTGAGCa > 1:298138/1‑150 (MQ=255) ccGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAATGGCGCACGGCGGGTAATGTGCACCAGCTTTGTCGAGCAGAAGCAGAACAGCCAGTCGCCATCGCTGAGCa > 1:298288/1‑150 (MQ=255) cACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAATGGCGCACGGCGGGTAATGTGCACCAGCTTTGTCGAGCAGAAGCAGAACAGCCAGTCGCCATCGCTGAGCATGCAGtt < 2:661167/150‑1 (MQ=255) tGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAATGGCGCACGGCGGGTAATGTGCACCAGCTTTGTCGAGCAGAAGCAGAACAGCCAGTCGCCATCGCTGAGCATGCATTTGAACAccc < 2:298288/150‑1 (MQ=255) tGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAATGGCGCACGGCGGGTAATGTGCACCAGCTTTGTCGAGCAGAAGCAGAACAGCCAGTCGCCATCGCTGAGCATGCAGTTGAACAccc < 2:298138/150‑1 (MQ=255) gggggTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAATGGCGCACGGCGGGTAATGTGCACCAGCTTTGTCGAGCAGAAGCAGAACAGCCAGTCGCCATCGCTGAGCATGc < 1:380738/137‑1 (MQ=255) gggggTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAATGGCGCACGGCGGGTAATGTGCACCAGCTTTGTCGAGCAGAAGCAGAACAGCCAGTCGCCATCGCTGAGCATGc > 2:380738/1‑137 (MQ=255) ggggTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAATGGCGCACGGCGGGTAATGTGCACCAGCTTTGTCGAGCAGAAGCAGAACAGCCAGTCGCCATCGCTGAGCATGCAGTTGAACAccccc < 1:212754/150‑1 (MQ=255) aaTCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAGTGGCGCACGGCGGGTAATGTGCACCAGCTTTGTCGAGCAGAAGCAGAACAGCCAGTCGCCATCGCTGAGCATGCAGTTGAACACCCCCAGATCCCGGTAGCCGGcac > 1:295309/1‑150 (MQ=255) aTCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAATGGCGCACGGCGGGTAATGTGCACCAGCTTTGTCGAGCAGAAGCAGAACAGCCAGTCGCCATCGCTGAGCATGCAGAAGAGCACCCCCAGATCCCGGTAGCCGGcaca > 1:599498/1‑150 (MQ=255) tCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAATGGCGCACGGCGGGTAATGTGCACCAGCTTTGTCGAGCAGAAGCAGAACAGCCAGTCGCCATCGCTGAGCATGCAGTTGAACACCCCCAGATCCCGGTAGCCGGCACAg < 2:233770/150‑1 (MQ=255) tCAGTTCGACATCTTTCATCCGTGCGGCTCCGAATGGCGCACGGCGGGTCATGTGCACCAGCTTTGTCGAGCAGAAGCAGAACAGCCAGTCGCCATCGCTGAGCCTGCAGTTGAACACCCCCAGATCCCGGTAGCCGGCACAGGCTTCGa < 2:130244/150‑1 (MQ=255) aGGTCGACATCCTTCAACCGTGCGGCACCGAATGGCGCACGGCGGGTAATGTGCACCAGCTTTGTCGAGCAGAAGCAGAACAGCCAGTCGCCATCGCTGAGCATGCAGTTGAACACCCCCAGATCCCGGTAGCCGGCACAGGCTTCGAcc > 1:46987/1‑150 (MQ=255) gACATCCTTCAACCGTGCGGCACCGAGTGGCGCACGGCGGGTAATGTGCACCAGCTTTGTCGAGCAGAAGCAGAACAGCCAGTCGCCATCGCTGAGCATGCAGTTGAACACCCCCAGATCCCGGTAGCCGGCACAGGCTTCGACCAGCAc < 2:295309/150‑1 (MQ=255) cTTCAACCGTGCGGCACCGAATGGcgcacggttgaaggatgtcgacctgatcgtcgattttcataccgaaaccacccccaacgacgtggtcacggtgattgccaccgaggccctgaccgagaacgagacctggcaccgctacgcgccggg < 1:367881‑M2/150‑127 (MQ=255) cTTCAACCGTGCGGCACCGAATGGcgcacggttgaaggatgtcgacctgatcgtcgattttcataccgaaaccacccccaacgacgtggtcacggtga < 2:334484‑M2/98‑75 (MQ=255) cTTCAACCGTGCGGCACCGAATGGcgcacggttgaaggatgtcgacctgatcgtcgattttcataccgaaaccacccccaacgacgtggtcacggtga > 1:334484‑M2/1‑24 (MQ=255) aaCCGTGCGGCACCGAATGGcgcacggttgaaggatgtcgacctgatcgtcgattttcataccgaaaccacccccaacgacgtggtcacggtgattg > 1:599538‑M2/1‑20 (MQ=255) aaCCGTGCGGCACCGAATGGcgcacggttgaaggatgtcgacctgatcgtcgattttcataccgaaaccacccccaacgacgtggtcacggtgattg < 2:599538‑M2/97‑78 (MQ=255) ccGTGCGccattcggtgccgcacggttgaaggatgtcgacctgatcgtcgattttcataccgaaaccacccccaacgacgtggtcacggtgattgccaccgaggccctgaccgagaacgagacctggcaccgctacgcgccgggtcagtg < 2:42256‑M1/150‑144 (MQ=255) | AGGGCCCACTGACCCGGCGCGTAGCGGTGCCAGGTCTCGTTCTCGGTCAG‑GGCCT‑CGGTGGCAATCACCGTGACCACGTCGTTGGGGGTGGTTTCGGTATGAAAATCGACGATCAGGTCGACATCCTTCAACCGTGCGGCACCGAATGGCGCACGGCGGGTAATGTGCACCAGCTTTGTCGAGCAGAAGCAGAACAGCCAGTCGCCATCGCTGAGCATGCAGTTGAACACCCCCAGATCCCGGTAGCCGGCACAGGCTTCGACCAGCACTGGCAGCAGCTG > NC_002947/5200317‑5200597 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |