New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5980277 =	45 (1.520)	3 (0.110)	3/236	NT	6.9%	coding (866/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
	?	NC_002947	5980318 =	38 (1.340)					coding (907/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase

TCGACTTGCCCATGCCAGCAGCGCCGTTGATGACCAGGGCTTGTGGTTTGCTATCGCGATTCAAGGCCTTGAGCAGCAGGGTGATAGCCTTTTGCTCGGCGCCGCGGCCAAACAGGCGCGCGTGGCCGGGCGCTACCGGGTCGGCGCAGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5980429‑5980277 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCAAACCACAAGCCCTGGTCATCAACGGCGCTGCTGGCATGGGCAAGTCGAGCCTGGTCGAAGCCGCTCTCAAGGCCAACGCCGAAGG  >  NC_002947/5980318‑5980466                                                                                                                                                                                                                                                                                                                TCGACTTGCCCATGCCAGCAGCGCCGTTGATGACCAGGGCTTGTGGTTTGCTATCGCGATTCAAGGCCTTGAGCAGCAGGGTGATAGCCTTTTGCTCGGCGCCGCGGCCAAACAGGCGCGCGTGGCCGGGCGCTACCGGGTCGGCGCAGC                                                                                                                                                          <  1:59236/150‑1                                                                                                                  AGGCGCGCGTGGCCGGGCGCTACCGGGTCGGCGCAGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCAAACCACAAGCCCTGGTCATCAACGGCGCTGCTGGCATGGGCAAGTC                                         >  2:54157/1‑150                                                                                                                    GCGCGCGTGGCCGGGCGCTACCGGGTCGGCGCAGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCAAACCACAAGCCCTGGTCAT                                                                    <  1:615438/121‑1                                                                                                                    GCGCGCGTGGCCGGGCGCTACCGGGTCGGCGCAGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCAAACCACAAGCCCTGGTCAT                                                                    >  2:615438/1‑121                                                                                                                                                        TGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCAAACCACAAGCCCTGGTCATCAACGGCGCTGCTGGCATGGGCAAGTCGAGCCTGGTCGAAGCCGCTCTCAAGGCCAACGCCGAAG   <  1:633304/150‑1                                                                                                                                                         GTTGGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGCCCTACAATCGCAATAGCAAACCACAAGCCCTGGTCATCAACGGCGCTGCTGGCATGGGCAAGTCGAGCCTGGTCGAAGCCGCTCTCAAGGCCAACGCCGAAGG  <  1:169481/150‑1                                                                                                                                                                                                                                                                                                                TCGACTTGCCCATGCCAGCAGCGCCGTTGATGACCAGGGCTTGTGGTTTGCTATCGCGATTCAAGGCCTTGAGCAGCAGGGTGATAGCCTTTTGCTCGGCGCCGCGGCCAAACAGGCGCGCGTGGCCGGGCGCTACCGGGTCGGCGCAGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5980429‑5980277 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCAAACCACAAGCCCTGGTCATCAACGGCGCTGCTGGCATGGGCAAGTCGAGCCTGGTCGAAGCCGCTCTCAAGGCCAACGCCGAAGG  >  NC_002947/5980318‑5980466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.