New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5980277 = | 45 (1.520) | 3 (0.110) | 3/236 | NT | 6.9% | coding (866/5049 nt) | PP_5242 | GAF domain‑containing sensor histidine kinase |
? | NC_002947 | 5980318 = | 38 (1.340) | coding (907/5049 nt) | PP_5242 | GAF domain‑containing sensor histidine kinase |
CAAGGTGCCGCACTCCCTCAGCCTGGTCCTGGCAAAGGCCTTGGCCAAAGAGCCGGACGCCCGCTACCAGAGCGCGCGCGCCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCAAACCACAAGCCCTGGTCATCAACGGCGCTGCTGGCATGGGC > NC_002947/5980128‑5980422 | ccttcggcgttggccttgagagcggcttcgaccaggctcgacttgcccatgccagcagcgccgttgatgaccagggcttgtggtttgctattgcgattgtagggcttgagcagcagggtgatagccttttgctcggcgccgcggcccaac < 1:169481‑M1/1‑1 (MQ=255) cAAGGTGCCGCACTCCCTCAGCCTGGTCCTGGCAAAGGCCTTGGCCAAAGAGCCGGACGCCCGCTACCAGAGCGCGCGCGCCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCAcccc > 2:380854/1‑150 (MQ=255) cttcggcgttggccttgagagcggcttcgaccaggctcgacttgcccatgccagcagcgccgttgatgaccagggcttgtggtttgctatcgcgattcaaggccttgagcagcagggtgatagccttttgctcggcgccgcggccaaaCa < 1:633304‑M1/2‑1 (MQ=255) ccTCAGCCTGGTCCTGGCAAAGGCCTTGGCCAAAGAGCCGGACGCCCGCTACCAGAGCGCGCGCGCCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGAccc > 1:593380/1‑150 (MQ=255) gTCCTGGCAAAGGCCTTGGCCAAAGAGCCGGACGCCCGCTACCAGAGCGCGCGCGCCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGccc > 1:125419/1‑150 (MQ=255) tCCTGGCAAAGGCCTTGGCCAAAGAGCCGGACGCCCGCTACCAGAGCGCGCGCGCCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCg < 1:730820/150‑1 (MQ=255) tCCTGGCAAAGGCCTTGGCCAAAGAGCCGGACGCCCGCTACCAGAGCGCGCGCGCCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCg > 1:429788/1‑150 (MQ=255) tGGCAAAGGCCTTGGCCAAAGAGCCGGACGCCCGCTACCAGAGCGCGCGCGCCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAgc < 2:427395/142‑1 (MQ=255) tGGCAAAGGCCTTGGCCAAAGAGCCGGACGCCCGCTACCAGAGCGCGCGCGCCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAgc > 1:427395/1‑142 (MQ=255) tGGCAAAGGCCTTGGCCAAAGAGCCGGACGCCCGCTACCAGAGCGCGCGCGCCTTTGCAGTGGACTTGGCTAACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGcc > 2:586273/1‑150 (MQ=255) gCCTTGGCCAAAGGGCCGGACGCCCGCTACCAGAGCGCGCGCGCCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCCCCCTTCACCCCAGCCTGCGCCGACCCGGTAGCGCCCGGCCACgcgcgc < 2:446711/150‑1 (MQ=255) gacttgcccatgccagcagcgccgttgatgaccagggcttgtggtttgctatcgcgattcaaggccttgagcagcagggtgatagccttttgctcggcgccgcggccaaaCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCt > 2:54157‑M1/111‑150 (MQ=255) gCCAAAGAGCCGGACGCCCGCTACCAGAGCGCGCGCGCCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGttt < 2:69521/150‑1 (MQ=255) ccAAAGAGCCGGACGCCCGCTACCAGAGCGCGCGCGCCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTg < 2:429788/150‑1 (MQ=255) cAAAGAGCCGGACGCCCGCTACCAGAGCGCGCGCGCCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTa > 2:296310/1‑124 (MQ=255) cAAAGAGCCGGACGCCCGCTACCAGAGCGCGCGCGCCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTa < 1:296310/124‑1 (MQ=255) aaaGAGCCGGACGCCCGCTACCAGAGCGCGCGCGCCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGc < 1:254156/150‑1 (MQ=255) cGCCCGCTACCAGAGCGCGCGCGCCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGa < 2:593380/150‑1 (MQ=255) cTACCAGAGCGCGCGCGCCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCaaaa < 2:242959/150‑1 (MQ=255) atgaccagggcttgtggtttgctatcgcgattcaaggccttgagcagcagggtgatagccttttgctcggcgccgcggccaaaCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACgcgcgc > 2:615438‑M1/84‑121 (MQ=255) atgaccagggcttgtggtttgctatcgcgattcaaggccttgagcagcagggtgatagccttttgctcggcgccgcggccaaaCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACgcgcgc < 1:615438‑M1/38‑1 (MQ=255) cAGAGCGCGCGCGCCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCAcccc > 2:560352/1‑83 (MQ=255) cAGAGCGCGCGCGCCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCAcccc < 1:560352/83‑1 (MQ=255) cAGAGCGCGCGCGCCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCt > 2:552238/1‑150 (MQ=255) gcgcgcCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCct > 1:479810/1‑150 (MQ=255) gcgcgcCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCct > 1:723544/1‑150 (MQ=255) gcgcCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCgcgg > 1:244478/1‑124 (MQ=255) gcgcCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCgcgg < 2:244478/124‑1 (MQ=255) tttGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTc < 2:79267/150‑1 (MQ=255) tttGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTc < 1:552238/150‑1 (MQ=255) ttGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCa < 2:556179/150‑1 (MQ=255) aGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGc > 2:302527/1‑150 (MQ=255) aGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGc > 1:702589/1‑150 (MQ=255) tGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCt < 1:586273/150‑1 (MQ=255) ggACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCtt < 2:721307/150‑1 (MQ=255) gCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATcgc < 2:272476/150‑1 (MQ=255) tGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCAcgc > 1:635113/1‑80 (MQ=255) tGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCAcgc < 2:635113/80‑1 (MQ=255) tGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGc > 2:353035/1‑150 (MQ=255) aGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCAAAc < 1:380854/150‑1 (MQ=255) gccgccCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCAAACCACAAGCCCTg < 2:76750/150‑1 (MQ=255) ccgccCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCAAACCACAAGCCCTgg > 1:15422/1‑150 (MQ=255) ccgccCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCAAACCACAAGCCCTgg < 1:302527/150‑1 (MQ=255) aaaaCCATGGCACGCTTGACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCCTGAATCGCGATAGCAAACCACAAGCCCTGGTCATCAAc < 2:460061/150‑1 (MQ=255) aaCCATGGCACCCTGCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCAAACCACAAGCCCTGGTCATCAACgg < 2:348956/150‑1 (MQ=255) gCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCAAACCACAAGCCCTGGt < 1:44082/134‑1 (MQ=255) gCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCAAACCACAAGCCCTGGt > 2:44082/1‑134 (MQ=255) cccTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCAAACCACAAGCCCTGGTCATCAACGGCGCTGCTGGc < 2:15422/150‑1 (MQ=255) ccTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCAAACCACAAGCCCTGGTCATCAACGGCGCTGCTGGCa > 1:409330/1‑150 (MQ=255) ttCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCaaa > 1:337986/1‑114 (MQ=255) ttCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCaaa > 1:337893/1‑114 (MQ=255) ttCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCaaa < 2:337986/114‑1 (MQ=255) ttCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCaaa < 2:337893/114‑1 (MQ=255) aCCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCAAACCACAAGCCCTGGTCATCAACGGCGCTGCTGGCATGGGc < 1:355976/150‑1 (MQ=255) | CAAGGTGCCGCACTCCCTCAGCCTGGTCCTGGCAAAGGCCTTGGCCAAAGAGCCGGACGCCCGCTACCAGAGCGCGCGCGCCTTTGCAGTGGACTTGGCTCACTGCCAGCGGCAGTGGGCCGCCCACAAAACCATGGCACCCTTCACCCCAGGCTGCGCCGACCCGGTAGCGCCCGGCCACGCGCGCCTGTTTGGCCGCGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCAAACCACAAGCCCTGGTCATCAACGGCGCTGCTGGCATGGGC > NC_002947/5980128‑5980422 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |