New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 251781	29 (0.980)	3 (0.110)	3/232	NT	9.6%	intergenic (+22/‑40)	PP_0201/PP_5432	hypothetical protein/hypothetical protein
	?	NC_002947	= 251799	29 (1.040)					intergenic (+40/‑22)	PP_0201/PP_5432	hypothetical protein/hypothetical protein

TCGACCCGAGTCTTACCCGCCAAGGCGATGTCTACCTGGAGGCGGGTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTTCATCACCAGCCATTCCCCGCTGAAGAACGA  >  NC_002947/251632‑251930                                                                                                                                                      |                                                                                                                                                      tCGACCCGAGTCTTACCCGCCAAGGCGATGTCTACCTGGAGGCGGGTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGC                                                                                                                                                       >  1:132806‑M1/1‑150 (MQ=255)      ccGAGTCTTACCCGCCAAGGCGATGTCTACCTGGAGGCGGGTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAggcgggcg                                                                                                                                                  >  1:476625/1‑150 (MQ=255)      ccGAGTCTTACCCGCCAAGGCGATGTCTACCCGGAGGCGGGTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAggcgggcg                                                                                                                                                  >  1:343345/1‑150 (MQ=255)        gAGTCTTACCCGCCAAGGCGATGTCTACCTGGAGGCGGGTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGcgtc                                                                                                                                                >  1:288051/1‑150 (MQ=255)             ttACCCGCCAAGGCGATGTCTACCTGGAGGCGGGTGACCACGATCACCTGATTCACATGAGCATGGAGAAGTACATTAAACTGGTGCCGCACGCCGAAGTGCGAGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGa                                                                                                                                           >  1:52638/1‑150 (MQ=255)                    ccAAGGCGATGTCTACCTGGAGGCGGGTGACCCGGTGCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGTTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTg                                                                                                                                    <  1:585447‑M2/150‑2 (MQ=255)                          cGATGTCTACCTGGAGGCGGGTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCGTATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTgcctggc                                                                                                                              >  1:418472‑M2/1‑143 (MQ=255)                                cTACCTGGAGGCGGGTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCaagccgtccacgacgcccgcctggcattggt                                                                                                                        <  2:317475‑M1/150‑32 (MQ=255)                                cTACCTGGAGGCGGGTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCag                                                                                                                        <  2:476625/150‑1 (MQ=255)                                 tACCTGGAGGCGGGTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCagg                                                                                                                       <  2:763786/150‑1 (MQ=255)                                  acccggAGGCGGGTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCagga                                                                                                                      <  2:343345/146‑1 (MQ=255)                                                   cACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCaagccgtccacgacgcccgcctggca                                                                                                                             <  1:745609‑M1/126‑27 (MQ=255)                                                   cACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCaagccgtccacgacgcccgcctggca                                                                                                                             >  2:745609‑M1/1‑100 (MQ=255)                                                   cACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGcc                                                                                                     >  1:532730/1‑150 (MQ=255)                                                        tCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGatcc                                                                                                <  1:191177/150‑1 (MQ=255)                                                           ccTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGACGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGatccatc                                                                                             >  2:200636/1‑150 (MQ=255)                                                                            tGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGcc                                                                                                     >  2:227413/1‑125 (MQ=255)                                                                            tGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGcc                                                                                                     <  1:227413/125‑1 (MQ=255)                                                                                   gTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAagcagc                                                                     >  1:390717/1‑150 (MQ=255)                                                                                     aCATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGGACCATGGAAGCGCCGATCCATCCCGTTGCCGAACTGTTCAAGCAGCTg                                                                   <  2:132806/150‑1 (MQ=255)                                                                                            aCTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTAc                                                            >  2:74418/1‑150 (MQ=255)                                                                                             cTGGTGCCGCACGACGAAGTGCGCGAGCTGTGCTTATTTTTTCAAACCAAGGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTAcc                                                           <  2:288051/150‑1 (MQ=255)                                                                                                         gCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCAc                                               <  2:52638/150‑1 (MQ=255)                                                                                                           cGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCACACGa                                             <  2:532730/150‑1 (MQ=255)                                                                                                                       gCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGt                                 <  2:390717/150‑1 (MQ=255)                                                                                                                         tgtgCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATg                                                                                                             >  2:798389/1‑72 (MQ=255)                                                                                                                         tgtgCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATg                                                                                                             <  1:798389/72‑1 (MQ=255)                                                                                                                         tgtgCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGaa                                                                                                          >  1:548432/1‑75 (MQ=255)                                                                                                                         tgtgCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGaa                                                                                                          <  2:548432/75‑1 (MQ=255)                                                                                                                             cTGATGTTTTCAAACCAATGCCAGGCGGGCGTGGTGGACGGCTTGCCTTGCGCTCAGAAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTtcatca                           <  2:146433/150‑1 (MQ=255)                                                                                                                              tGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGc                                                                                      >  2:113274/1‑90 (MQ=255)                                                                                                                              tGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGc                                                                                      <  1:113274/90‑1 (MQ=255)                                                                                                                                  gTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGaa                                                                                                          >  2:369593/1‑66 (MQ=255)                                                                                                                                  gTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGaa                                                                                                          <  1:369593/66‑1 (MQ=255)                                                                                                                                       cAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTTCATCACCAGCCATTc                 <  1:74418/150‑1 (MQ=255)                                                                                                                                          aCCAATGCCAGGCGGGCGTCGTGGACGGCTTgcctggcattggtttgaaaacatcagcacagctcgcgcacttcggcgtgcggcaccagtttcatgtactgctccatgctcatgtgaatcaggtgatcgtggtcacccgcctccaggtag              <  2:317475‑M2/150‑120 (MQ=255)                                                                                                                                          aCCAATGCCAGGCGGGCGTCGTGGACGGCTTGTAGAATGAACAGTAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTTCATCACCAGCCATTcccc              <  2:585447/150‑1 (MQ=255)                                                                                                                                            cAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGAGCAGTTCATCACCAGCCATTCCCCGc            >  2:499045/1‑150 (MQ=255)                                                                                                                                               tGCCAGGCGGGCGTCGTGGACGGCTTgcctggcattggtttgaaaacatcagcacagctcgcgcacttcggcgtgcggcaccagtttcatgtactgctccatgctcatgtgaatcaggtgatcgtg                                 <  1:745609‑M2/126‑101 (MQ=255)                                                                                                                                               tGCCAGGCGGGCGTCGTGGACGGCTTgcctggcattggtttgaaaacatcagcacagctcgcgcacttcggcgtgcggcaccagtttcatgtactgctccatgctcatgtgaatcaggtgatcgtg                                 >  2:745609‑M2/1‑26 (MQ=255)                                                                                                                                                gCCAGGCaagccgtccacgacgcccgcctggcattggtttgaaaacatacgcacagctcgcgcacttcggcgtgcggcaccagtttcatgtactgctccatgctcatgtgaatcaggtgatcgtggtcacccgcctccaggtagacatcg        >  1:418472‑M1/1‑7 (MQ=255)                                                                                                                                                      caagccgtccacgacgcccgcctggcattggtttgaaaacatcagcacagctcgcgcacttcggcgtgcggcaacagtttcatgtactgctccatgctcatgtgaatcaggtgcaccgggtcacccgcctccaggtagacatcgccttgg  <  1:585447‑M1/150‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                      TCGACCCGAGTCTTACCCGCCAAGGCGATGTCTACCTGGAGGCGGGTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTTCATCACCAGCCATTCCCCGCTGAAGAACGA  >  NC_002947/251632‑251930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.