New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 251781	29 (0.980)	3 (0.110)	3/232	NT	9.6%	intergenic (+22/‑40)	PP_0201/PP_5432	hypothetical protein/hypothetical protein
	?	NC_002947	= 251799	29 (1.040)					intergenic (+40/‑22)	PP_0201/PP_5432	hypothetical protein/hypothetical protein

CCAAGGCGATGTCTACCTGGAGGCGGGTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTTCATCACCAGCCATTCCCCGCTGAAGAACGAAATCAAGCTGGT  >  NC_002947/251651‑251942                                                                                                                                                     |                                                                                                                                                ccAAGGCGATGTCTACCTGGAGGCGGGTGACCCGGTGCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGTTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTg                                                                                                                                                <  1:585447‑M2/150‑2 (MQ=255)       cGATGTCTACCTGGAGGCGGGTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCGTATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTgcctggc                                                                                                                                          >  1:418472‑M2/1‑143 (MQ=255)             cTACCTGGAGGCGGGTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCag                                                                                                                                    <  2:476625/150‑1 (MQ=255)              tACCTGGAGGCGGGTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCagg                                                                                                                                   <  2:763786/150‑1 (MQ=255)               acccggAGGCGGGTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCagga                                                                                                                                  <  2:343345/146‑1 (MQ=255)                                cACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGcc                                                                                                                 >  1:532730/1‑150 (MQ=255)                                     tCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGatcc                                                                                                            <  1:191177/150‑1 (MQ=255)                                        ccTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGACGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGatccatc                                                                                                         >  2:200636/1‑150 (MQ=255)                                                         tGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGcc                                                                                                                 >  2:227413/1‑125 (MQ=255)                                                         tGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGcc                                                                                                                 <  1:227413/125‑1 (MQ=255)                                                                gTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAagcagc                                                                                 >  1:390717/1‑150 (MQ=255)                                                                  aCATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGGACCATGGAAGCGCCGATCCATCCCGTTGCCGAACTGTTCAAGCAGCTg                                                                               <  2:132806/150‑1 (MQ=255)                                                                         aCTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTAc                                                                        >  2:74418/1‑150 (MQ=255)                                                                          cTGGTGCCGCACGACGAAGTGCGCGAGCTGTGCTTATTTTTTCAAACCAAGGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTAcc                                                                       <  2:288051/150‑1 (MQ=255)                                                                                      gCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCAc                                                           <  2:52638/150‑1 (MQ=255)                                                                                        cGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCACACGa                                                         <  2:532730/150‑1 (MQ=255)                                                                                                    gCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGt                                             <  2:390717/150‑1 (MQ=255)                                                                                                      tgtgCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATg                                                                                                                         >  2:798389/1‑72 (MQ=255)                                                                                                      tgtgCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATg                                                                                                                         <  1:798389/72‑1 (MQ=255)                                                                                                      tgtgCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGaa                                                                                                                      >  1:548432/1‑75 (MQ=255)                                                                                                      tgtgCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGaa                                                                                                                      <  2:548432/75‑1 (MQ=255)                                                                                                          cTGATGTTTTCAAACCAATGCCAGGCGGGCGTGGTGGACGGCTTGCCTTGCGCTCAGAAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTtcatca                                       <  2:146433/150‑1 (MQ=255)                                                                                                           tGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGc                                                                                                  <  1:113274/90‑1 (MQ=255)                                                                                                           tGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGc                                                                                                  >  2:113274/1‑90 (MQ=255)                                                                                                               gTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGaa                                                                                                                      <  1:369593/66‑1 (MQ=255)                                                                                                               gTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGaa                                                                                                                      >  2:369593/1‑66 (MQ=255)                                                                                                                    cAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTTCATCACCAGCCATTc                             <  1:74418/150‑1 (MQ=255)                                                                                                                       aCCAATGCCAGGCGGGCGTCGTGGACGGCTTgcctggcattggtttgaaaacatcagcacagctcgcgcacttcggcgtgcggcaccagtttcatgtactgctccatgctcatgtgaatcaggtgatcgtggtcacccgcctccaggtag                          <  2:317475‑M2/150‑120 (MQ=255)                                                                                                                       aCCAATGCCAGGCGGGCGTCGTGGACGGCTTGTAGAATGAACAGTAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTTCATCACCAGCCATTcccc                          <  2:585447/150‑1 (MQ=255)                                                                                                                         cAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGAGCAGTTCATCACCAGCCATTCCCCGc                        >  2:499045/1‑150 (MQ=255)                                                                                                                            tGCCAGGCGGGCGTCGTGGACGGCTTgcctggcattggtttgaaaacatcagcacagctcgcgcacttcggcgtgcggcaccagtttcatgtactgctccatgctcatgtgaatcaggtgatcgtg                                             >  2:745609‑M2/1‑26 (MQ=255)                                                                                                                            tGCCAGGCGGGCGTCGTGGACGGCTTgcctggcattggtttgaaaacatcagcacagctcgcgcacttcggcgtgcggcaccagtttcatgtactgctccatgctcatgtgaatcaggtgatcgtg                                             <  1:745609‑M2/126‑101 (MQ=255)                                                                                                                                                cGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCAc                                                           >  1:256307/1‑92 (MQ=255)                                                                                                                                                cGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCAc                                                           <  2:256307/92‑1 (MQ=255)                                                                                                                                                    ttGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTTCATCACCAGCCATTCCCCGCTGAAGAACGa              <  1:525894/133‑1 (MQ=255)                                                                                                                                                    ttGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTTCATCACCAGCCATTCCCCGCTGAAGAACGa              >  2:525894/1‑133 (MQ=255)                                                                                                                                                    ttGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTTCATCACCAGCCATTCCCCGCTGAAGAACGAAATCAAGCtggt  <  1:520871/145‑1 (MQ=255)                                                                                                                                                    ttGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTTCATCACCAGCCATTCCCCGCTGAAGAACGAAATCAAGCtggt  >  2:520871/1‑145 (MQ=255)                                                                                                                                                     |                                                                                                                                                CCAAGGCGATGTCTACCTGGAGGCGGGTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGCGCTCAGGAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTTCATCACCAGCCATTCCCCGCTGAAGAACGAAATCAAGCTGGT  >  NC_002947/251651‑251942

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.