New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 637157	44 (1.490)	4 (0.140)	4/234	NT	8.6%	coding (32/630 nt)	PP_0548	phenylacrylic acid decarboxylase PadA
	?	NC_002947	= 637180	43 (1.530)					coding (55/630 nt)	PP_0548	phenylacrylic acid decarboxylase PadA

CTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGGCACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGATGTTGTGTTGCCGGCCAAGCCCCAGGCG  >  NC_002947/637013‑637305                                                                                                                                                 |                                                                                                                                                     cTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGGCACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCAGAGACGCTGAAGTAAACGGGCCGGAACGCATCACCCTGGCCATGACgg                                                                                                                                                 >  1:301352/1‑150 (MQ=255)   cGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGGCACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGgc                                                                                                                                               <  1:751372/150‑1 (MQ=255)          atcatcGAGCGGGTCAAAGGTCAGGCTCGCCCAGGCACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCgg                                                                                                                                        <  2:565186/150‑1 (MQ=255)             atcGAGCGGGTCAAAGGTCAGGCTCGCCCAGGCACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCATAGGGTg                                                                                                                                     >  2:201812/1‑150 (MQ=255)                      gTCAAAGGTCAGGCTCGCCCAGGCACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATgacgggcacccgaggcgcccgtcatg                                                                                                                            <  1:561171‑M1/150‑27 (MQ=255)                       tCAAAGGTCAGGCTCGCCCAGGCACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTatgg                                                                                                                           <  2:393931‑M2/150‑5 (MQ=255)                          aaGGTCAGGCTCGCCCAGGCACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATactgggcacccgaggcgcccgtcatggcca                                                                                                                        <  1:229965‑M1/150‑31 (MQ=255)                           aGGTCAGGCTCGCCCAGGCACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTGTGGCCtt                                                                                                                       >  1:165342/1‑150 (MQ=255)                            ggTCAGGCTCGCCCAGGCACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTc                                                                                                                      <  2:132287/150‑1 (MQ=255)                                    tCGGCCAGGCACCCAGGTAGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTtctc                                                                                                              >  2:175806/1‑150 (MQ=255)                                                     tggtgATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGa                                                                                             >  1:683060/1‑150 (MQ=255)                                                       gtgATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGgc                                                                                                                                               <  1:641365/98‑1 (MQ=255)                                                       gtgATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGgc                                                                                                                                               >  2:641365/1‑98 (MQ=255)                                                        tgATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGCGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGa                                                                                          <  1:373174/150‑1 (MQ=255)                                                           tCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTAGCGTGCGCGATTGCCTGGTACGCGAAGAccc                                                                                       >  1:599310/1‑149 (MQ=255)                                                             aTGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACcgcg                                                                                     >  2:510323/1‑150 (MQ=255)                                                              tGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACcgcgg                                                                                    >  1:170330/1‑149 (MQ=255)                                                               gAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTGTGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAg                                                                                   <  2:165342/150‑1 (MQ=255)                                                               gAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAg                                                                                   >  2:508110/1‑150 (MQ=255)                                                                 gCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGt                                                                                 <  1:122659/150‑1 (MQ=255)                                                                 gCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGt                                                                                 >  1:589432/1‑150 (MQ=255)                                                                     cggcggCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGt                                                                                                   <  2:249713/128‑1 (MQ=255)                                                                     cggcggCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGt                                                                                                   >  1:249713/1‑128 (MQ=255)                                                                            ttCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGa                                                                      >  1:228657/1‑150 (MQ=255)                                                                                   gcCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCaa                                                               <  2:774406/150‑1 (MQ=255)                                                                                    ccTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAg                                                              <  1:510323/150‑1 (MQ=255)                                                                                    ccTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGGATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAg                                                              >  1:156955/1‑150 (MQ=255)                                                                                     cTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAgg                                                             >  1:595133/1‑150 (MQ=255)                                                                                     cTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAgg                                                             <  1:583903/150‑1 (MQ=255)                                                                                     cTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAgg                                                             >  1:244597/1‑150 (MQ=255)                                                                                     cTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAgg                                                             <  2:595133/150‑1 (MQ=255)                                                                                      tGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGcc                                                                                                       >  1:238379/1‑107 (MQ=255)                                                                                      tGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGcc                                                                                                       <  2:238379/107‑1 (MQ=255)                                                                                                 cTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCTTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGTCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTgg                                                 <  2:331086/150‑1 (MQ=255)                                                                                                    gCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGa                                              <  2:244597/150‑1 (MQ=255)                                                                                                     ccGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATactgggcacccgaggcgcccgtcatggccag                                                                                                                       <  2:300159‑M1/76‑32 (MQ=255)                                                                                                     ccGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATactgggcacccgaggcgcccgtcatggccag                                                                                                                       >  1:300159‑M1/1‑45 (MQ=255)                                                                                                      cGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATg                                            <  1:324710/150‑1 (MQ=255)                                                                                                      cGAGGCGCTGAAGTGAACGGGCCAGACGTGATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATg                                            <  1:201812/150‑1 (MQ=255)                                                                                                                aaGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCgaga                                  <  2:683060/150‑1 (MQ=255)                                                                                                                  gTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACg                                >  2:410927/1‑150 (MQ=255)                                                                                                                                aCGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATg                                            <  2:48507/124‑1 (MQ=255)                                                                                                                                aCGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTGCCAAGGCCGCACAGTTGGTGATg                                            >  1:48507/1‑124 (MQ=255)                                                                                                                                 cGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGATGTTGTGTTGCCg                 <  2:589432/150‑1 (MQ=255)                                                                                                                                       aCCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGATGTTGTGTTGCCGGCCAAg           >  1:497044/1‑150 (MQ=255)                                                                                                                                        cccTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGAtgttgtgtt                     >  1:610162/1‑139 (MQ=255)                                                                                                                                        cccTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGAtgttgtgtt                     <  2:610162/139‑1 (MQ=255)                                                                                                                                          cTGGCCATGACGGGCGCCTCGGGTGCCCAGTatggccagggtgatgcgttccggcccgttcacttcagcgcctcgg                                                                                  <  2:300159‑M2/76‑46 (MQ=255)                                                                                                                                          cTGGCCATGACGGGCGCCTCGGGTGCCCAGTatggccagggtgatgcgttccggcccgttcacttcagcgcctcgg                                                                                  >  1:300159‑M2/1‑31 (MQ=255)                                                                                                                                          cTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGATCCATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGATGTTGTGTTGCCGGCCAAGccc        >  2:311263/1‑150 (MQ=255)                                                                                                                                           tGGCCATGACGGGCGCCTCGGGTGCCCAGTatggccagggtgatgcgttccggcccgttcacttcagcgcctcggccagcttgccgtgcaggccgccgaagccgccgttgctcatgatcaccacctgggtgcctgggcgagcctgacctt       <  1:229965‑M2/150‑121 (MQ=255)                                                                                                                                           tGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGAtgtt                          <  2:432214/131‑1 (MQ=255)                                                                                                                                           tGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGAtgtt                          >  1:432214/1‑131 (MQ=255)                                                                                                                                              ccATactgggcacccgaggcgcccgtcatggccagggtgatgcgttccggcccgttcacttcagcgcctcggccagcttgccgtgcaggccgccgaagccgccgttgctcatgatcaccacctgggtgcctgggcgagcctgacctttga    <  2:393931‑M1/150‑147 (MQ=255)                                                                                                                                               cATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCCCTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGATGGTGTGTTGCCGGCCAAGCCCCAAGc   >  2:134471/1‑150 (MQ=255)                                                                                                                                               cATGACGGGCGCCTCGGGTGCCC‑GTcatggccagggtgatgcgttccggcccgttcacttcagcgcctcggccagcttgccgtgcaggccgccgaagccgccgttgctcatgatcaccacctgggtgcctgggcgagcctgacctttgac  <  1:561171‑M2/150‑126 (MQ=255)                                                                                                                                                 |                                                                                                                                                     CTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGGCACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGATGTTGTGTTGCCGGCCAAGCCCCAGGCG  >  NC_002947/637013‑637305

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.