New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 637157	44 (1.490)	4 (0.140)	4/234	NT	8.6%	coding (32/630 nt)	PP_0548	phenylacrylic acid decarboxylase PadA
	?	NC_002947	= 637180	43 (1.530)					coding (55/630 nt)	PP_0548	phenylacrylic acid decarboxylase PadA

TCAAAGGTCAGGCTCGCCCAGGCACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGATGTTGTGTTGCCGGCCAAGCCCCAGGCGATGCAGGCCTTCCTGACCGAA  >  NC_002947/637035‑637326                                                                                                                                                  |                                                                                                                                                   tCAAAGGTCAGGCTCGCCCAGGCACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTatgg                                                                                                                                                <  2:393931‑M2/150‑5 (MQ=255)     aGGTCAGGCTCGCCCAGGCACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTGTGGCCtt                                                                                                                                            >  1:165342/1‑150 (MQ=255)      ggTCAGGCTCGCCCAGGCACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTc                                                                                                                                           <  2:132287/150‑1 (MQ=255)              tCGGCCAGGCACCCAGGTAGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTtctc                                                                                                                                   >  2:175806/1‑150 (MQ=255)                               tggtgATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGa                                                                                                                  >  1:683060/1‑150 (MQ=255)                                  tgATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGCGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGa                                                                                                               <  1:373174/150‑1 (MQ=255)                                     tCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTAGCGTGCGCGATTGCCTGGTACGCGAAGAccc                                                                                                            >  1:599310/1‑149 (MQ=255)                                       aTGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACcgcg                                                                                                          >  2:510323/1‑150 (MQ=255)                                        tGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACcgcgg                                                                                                         >  1:170330/1‑149 (MQ=255)                                         gAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTGTGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAg                                                                                                        <  2:165342/150‑1 (MQ=255)                                         gAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAg                                                                                                        >  2:508110/1‑150 (MQ=255)                                           gCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGt                                                                                                      <  1:122659/150‑1 (MQ=255)                                           gCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGt                                                                                                      >  1:589432/1‑150 (MQ=255)                                               cggcggCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGt                                                                                                                        >  1:249713/1‑128 (MQ=255)                                               cggcggCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGt                                                                                                                        <  2:249713/128‑1 (MQ=255)                                                      ttCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGa                                                                                           >  1:228657/1‑150 (MQ=255)                                                             gcCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCaa                                                                                    <  2:774406/150‑1 (MQ=255)                                                              ccTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAg                                                                                   <  1:510323/150‑1 (MQ=255)                                                              ccTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGGATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAg                                                                                   >  1:156955/1‑150 (MQ=255)                                                               cTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAgg                                                                                  <  1:583903/150‑1 (MQ=255)                                                               cTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAgg                                                                                  >  1:595133/1‑150 (MQ=255)                                                               cTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAgg                                                                                  <  2:595133/150‑1 (MQ=255)                                                               cTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAgg                                                                                  >  1:244597/1‑150 (MQ=255)                                                                tGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGcc                                                                                                                            <  2:238379/107‑1 (MQ=255)                                                                tGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGcc                                                                                                                            >  1:238379/1‑107 (MQ=255)                                                                           cTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCTTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGTCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTgg                                                                      <  2:331086/150‑1 (MQ=255)                                                                              gCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGa                                                                   <  2:244597/150‑1 (MQ=255)                                                                                cGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATg                                                                 <  1:324710/150‑1 (MQ=255)                                                                                cGAGGCGCTGAAGTGAACGGGCCAGACGTGATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATg                                                                 <  1:201812/150‑1 (MQ=255)                                                                                          aaGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCgaga                                                       <  2:683060/150‑1 (MQ=255)                                                                                            gTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACg                                                     >  2:410927/1‑150 (MQ=255)                                                                                                          aCGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATg                                                                 <  2:48507/124‑1 (MQ=255)                                                                                                          aCGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTGCCAAGGCCGCACAGTTGGTGATg                                                                 >  1:48507/1‑124 (MQ=255)                                                                                                           cGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGATGTTGTGTTGCCg                                      <  2:589432/150‑1 (MQ=255)                                                                                                                 aCCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGATGTTGTGTTGCCGGCCAAg                                >  1:497044/1‑150 (MQ=255)                                                                                                                  cccTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGAtgttgtgtt                                          >  1:610162/1‑139 (MQ=255)                                                                                                                  cccTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGAtgttgtgtt                                          <  2:610162/139‑1 (MQ=255)                                                                                                                    cTGGCCATGACGGGCGCCTCGGGTGCCCAGTatggccagggtgatgcgttccggcccgttcacttcagcgcctcgg                                                                                                       <  2:300159‑M2/76‑46 (MQ=255)                                                                                                                    cTGGCCATGACGGGCGCCTCGGGTGCCCAGTatggccagggtgatgcgttccggcccgttcacttcagcgcctcgg                                                                                                       >  1:300159‑M2/1‑31 (MQ=255)                                                                                                                    cTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGATCCATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGATGTTGTGTTGCCGGCCAAGccc                             >  2:311263/1‑150 (MQ=255)                                                                                                                     tGGCCATGACGGGCGCCTCGGGTGCCCAGTatggccagggtgatgcgttccggcccgttcacttcagcgcctcggccagcttgccgtgcaggccgccgaagccgccgttgctcatgatcaccacctgggtgcctgggcgagcctgacctt                            <  1:229965‑M2/150‑121 (MQ=255)                                                                                                                     tGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGAtgtt                                               <  2:432214/131‑1 (MQ=255)                                                                                                                     tGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGAtgtt                                               >  1:432214/1‑131 (MQ=255)                                                                                                                         cATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCCCTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGATGGTGTGTTGCCGGCCAAGCCCCAAGc                        >  2:134471/1‑150 (MQ=255)                                                                                                                         cATGACGGGCGCCTCGGGTGCCC‑GTcatggccagggtgatgcgttccggcccgttcacttcagcgcctcggccagcttgccgtgcaggccgccgaagccgccgttgctcatgatcaccacctgggtgcctgggcgagcctgacctttgac                       <  1:561171‑M2/150‑126 (MQ=255)                                                                                                                            gACGGGCGCCTCGGGTGCCCAGTATGGCATTCCCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGATGTTGTGTTGCCGGCCAAGCCCCAGGCGAt                     <  2:301352/150‑1 (MQ=255)                                                                                                                               gggCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGATGTTGTGTTGCCGGCCAAGCCCCAGGCGATGCa                  <  2:497044/150‑1 (MQ=255)                                                                                                                                ggCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGATGTTGTGTTGCCGGCCAAGTCCCAGGCGATGCAg                 <  1:410927/150‑1 (MQ=255)                                                                                                                                      tCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCGGCACAGTTGGTGATGGCCACCGAGACGGATGTTGTGTTTGCGGCCCAGCAGCAGGGGAAGCAGGCCGTc           >  2:343751/1‑150 (MQ=255)                                                                                                                                          gTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGATGTTGTGTTGCCGGCCAAGCCCCAGGCGATGCAGGCCTTCCTGa       >  1:262772/1‑150 (MQ=255)                                                                                                                                               cAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGATGTTGTGTTGCCGGCCAAGCCCCAGGCGATGCAGGCCTTCCTGACCGaa  <  2:262772/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                   TCAAAGGTCAGGCTCGCCCAGGCACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCATCACCCTGGCCATGACGGGCGCCTCGGGTGCCCAGTATGGCCTTCGCCTGCTCGATTGCCTGGTACGCGAAGACCGCGAGGTGCACTTCCTGATTTCCAAGGCCGCACAGTTGGTGATGGCCACCGAGACGGATGTTGTGTTGCCGGCCAAGCCCCAGGCGATGCAGGCCTTCCTGACCGAA  >  NC_002947/637035‑637326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.