New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	884638 =	37 (1.250)	5 (0.170)	5/240	NT	11.6%	coding (546/2718 nt)	PP_0767	LuxR family transcriptional regulator
	?	NC_002947	884681 =	40 (1.390)					coding (589/2718 nt)	PP_0767	LuxR family transcriptional regulator

CTGCTCGACGAGCTGGCGCTGTACCTGCAAGCTGATACGCCGCTGCTGCTGGTACTGGACGACTATCACCTGGCCCAGGGGCCGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTACCGGCCTGCGCGGC  >  NC_002947/884489‑884776                                                                                                                                                      |                                                                                                                                            cgcaacgcggccacccagccgtcgctgcgctggatcaggttgtccagtgcctggccgcgcaggccggtaggctggcgaccgatcactgccaacgactcatccgcggtgaggcgcaggtcctgttcgttaagctcgaccaactgccgggac                                                                                                                                             >  2:154039‑M1/150‑150 (MQ=255)     tCGACGAGCTGGCGCTGTACCTGCAAGCTGATACGCCGCTGCTGCTGGTACTGGACGACTATCACCTGGCCCAGGGGCCGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAgcc                                                                                                                                         >  1:458544/1‑150 (MQ=255)     tCGACGAGCTGGCGCTGTACCTGCAAGCTGATACGCCGCTGCTGCTGGTACTGGACGACTATCACCTGGCCCAGGGGCCGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTG‑CCAgcct                                                                                                                                        >  1:184612/1‑149 (MQ=255)     acgacgaGCTGGCGCTGTACCTGCAAGCTGATACGCCGCTGCTGCTGGTACTGGACGACTATCACCTGGCCCAGGGGCCGGTGCTCGAACGTTGCCTGCAGTTCTTCCACAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAgcc                                                                                                                                         >  2:545776/2‑150 (MQ=255)         cgaGCTGGCGCTGTACCTGCAAGCTGATACGCCGCTGCTGCTGGTACTGGACGACTATCACCTGGCCCAGGGGCCTGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCCGCTCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCa                                                                                                                                     <  1:386436/150‑1 (MQ=255)            gCTGGCGCTGTACCTGCAAGCTGATACGCCGCTGCTGCTGGTACTGGACGACTATCACCTGGCCCAGGGGCCGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCg                                                                                                                                  <  2:150203/150‑1 (MQ=255)             cTGGCGCTGTACCTGCAAGCTGATACGCCGCTGCTGCTGGTACTGGACGACTATCACCTGGCCCAGGGGCCGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCg‑g                                                                                                                                >  1:237541/1‑150 (MQ=255)                          tgcgctggatcaggttgtccagtgcctggccgcgcaggccggtaggctggcgaccgatcactgccaacgactcatccgcggtgaggcgcaggtcctgttcgttaagctcgaccaactgccgggaCAGCCGCCAGCG‑GCCAGGCTGGCAcc                                                                                                                   <  1:503719‑M1/26‑1 (MQ=255)                                       gttgtccagtgcctggccgcgcaggccggtaggctggcgaccgatcactgccaacgactcatccgcggtgaggcgaaggtcctgttcgttaagctcgaccaactgccgggaCAGGCGCAGGCGCGCCAGGCTGGCACCTGGCgcgcctgc                                                                                                       >  2:273192‑M1/112‑150 (MQ=255)                                        ccgcTGCTGCTGGTACTGGACGACTATCACCTGGCCCAGGGGCCGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCgcgcctgcgc                                                                                                     <  1:75858/150‑1 (MQ=255)                                              agtgcctggccgcgcaggccggtaggctggcgaccgatcactgccaacgactcatccgcggtgaggcgcaggtcctgttcgttaagctcgaccaactgccgggaCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTcc                                                                                               >  2:503719‑M1/105‑150 (MQ=255)                                                    gTACTGGACGACTATCACCTGGCCCAGGGGCCGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAg                                                                                         <  2:158300/150‑1 (MQ=255)                                                          gacgacTATCACCTGGCCCAGGGGCCGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCgcgcct                                                                                                         >  2:83519/1‑128 (MQ=255)                                                          gacgacTATCACCTGGCCCAGGGGCCGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCgcgcct                                                                                                         <  1:83519/128‑1 (MQ=255)                                                          gacgacTATCACCTGGCCCAGGGGCCGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTc                                                                                   >  1:125198/1‑150 (MQ=255)                                                                    aCCTGGCCCAGGGGCCGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGGTTGTCGAGCTTAACg                                                                         >  2:323536/1‑150 (MQ=255)                                                                      cTGGCCCAGGGGCCGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGaa                                                                       <  2:237541/150‑1 (MQ=255)                                                                      cTGGCCCAGGGGCCGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGaa                                                                       >  1:694807/1‑150 (MQ=255)                                                                            cgggggCAGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCAGGCAGTTGGTCGAGATTAACGAACAGGAc                                                                 <  2:167329/148‑1 (MQ=255)                                                                            cAGGGGCCGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGTGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGAc                                                                 <  2:458544/150‑1 (MQ=255)                                                                                ggCCGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTgc                                                             <  2:125198/150‑1 (MQ=255)                                                                                         tCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCCGCCCCCCGCG‑ACCAGGCTGGCCCCGGGCGCGCCCGGCCCTGTCCCGGCAGGTGGCAGCGCTTCACGCACAGCACGTGCGCCTCACcg                                                    >  1:286161/1‑150 (MQ=255)                                                                                         tCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACcg                                                    >  1:331313/1‑150 (MQ=255)                                                                                           gACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTgc                                                             >  2:452818/1‑139 (MQ=255)                                                                                           gACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTgc                                                             <  1:452818/139‑1 (MQ=255)                                                                                           aacgactcatccgcggtgaggcgcaggtcctgttcgttaagctcgaccaactgccgggaCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCgcgcctgcgcct                                                                                                   >  1:316728‑M1/60‑101 (MQ=255)                                                                                           aacgactcatccgcggtgaggcgcaggtcctgttcgttaagctcgaccaactgccgggaCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCgcgcctgcgcct                                                                                                   <  2:316728‑M1/42‑1 (MQ=255)                                                                                             ccGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGa                                                <  1:538074/150‑1 (MQ=255)                                                                                                   ccTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGAc                                                                 >  2:217955/1‑127 (MQ=255)                                                                                                   ccTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGAc                                                                 <  1:217955/127‑1 (MQ=255)                                                                                                     gcgatttcttcCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGt                                        >  1:626344/6‑150 (MQ=255)                                                                                                      gCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGtt                                       >  1:373200/1‑150 (MQ=255)                                                                                                      gCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGtt                                       >  2:744238/1‑150 (MQ=255)                                                                                                       cAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTg                                      >  2:328431/1‑150 (MQ=255)                                                                                                                   aaTCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGt                          <  2:694807/150‑1 (MQ=255)                                                                                                                              ccccGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGa                                                >  2:235216/1‑117 (MQ=255)                                                                                                                              ccccGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGa                                                <  1:235216/117‑1 (MQ=255)                                                                                                                              ccccGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTAc               >  1:227009/1‑150 (MQ=255)                                                                                                                              ccccGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCGGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTAc               >  1:660585/1‑150 (MQ=255)                                                                                                                               cccGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACa                                                                     >  2:662139/1‑95 (MQ=255)                                                                                                                               cccGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACa                                                                     <  1:662139/95‑1 (MQ=255)                                                                                                                                ccGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTACCg             <  1:744238/150‑1 (MQ=255)                                                                                                                                ccGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTACCg             <  2:725209/150‑1 (MQ=255)                                                                                                                                   gCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGt                                 <  2:404717/127‑1 (MQ=255)                                                                                                                                   gCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGt                                 >  1:404717/1‑127 (MQ=255)                                                                                                                                           ttGCTGGTGACCAGCCTCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTACCGGACTGCGCGGc  >  1:235603/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                            CTGCTCGACGAGCTGGCGCTGTACCTGCAAGCTGATACGCCGCTGCTGCTGGTACTGGACGACTATCACCTGGCCCAGGGGCCGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCG‑GCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTACCGGCCTGCGCGGC  >  NC_002947/884489‑884776

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.