New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	884638 =	37 (1.250)	5 (0.170)	5/240	NT	11.6%	coding (546/2718 nt)	PP_0767	LuxR family transcriptional regulator
	?	NC_002947	884681 =	40 (1.390)					coding (589/2718 nt)	PP_0767	LuxR family transcriptional regulator

CTGCTGGTACTGGACGACTATCACCTGGCCCAGGGGCCGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTACCGGCCTGCGCGGCCAGGCACTGGACAACCTGATCCAGCGCAGCGACGGCTGGGTGGCCGGGTTGCGT  >  NC_002947/884534‑884830                                                                                                                                                    |                                                                                                                                                      agtgcctggccgcgcaggccggtaggctggcgaccgatcactgccaacgactcatccgcggtgaggcgcaggtcctgttcgttaagctcgaccaactgccgggaCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTcc                                                                                                                                                     >  2:503719‑M1/105‑150 (MQ=255)       gTACTGGACGACTATCACCTGGCCCAGGGGCCGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAg                                                                                                                                               <  2:158300/150‑1 (MQ=255)             gacgacTATCACCTGGCCCAGGGGCCGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTc                                                                                                                                         >  1:125198/1‑150 (MQ=255)                       aCCTGGCCCAGGGGCCGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGGTTGTCGAGCTTAACg                                                                                                                               >  2:323536/1‑150 (MQ=255)                         cTGGCCCAGGGGCCGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGaa                                                                                                                             >  1:694807/1‑150 (MQ=255)                         cTGGCCCAGGGGCCGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGaa                                                                                                                             <  2:237541/150‑1 (MQ=255)                               cgggggCAGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCAGGCAGTTGGTCGAGATTAACGAACAGGAc                                                                                                                       <  2:167329/148‑1 (MQ=255)                               cAGGGGCCGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGTGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGAc                                                                                                                       <  2:458544/150‑1 (MQ=255)                                   ggCCGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTgc                                                                                                                   <  2:125198/150‑1 (MQ=255)                                            tCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCCGCCCCCCGCGACCAGGCTGGCCCCGGGCGCGCCCGGCCCTGTCCCGGCAGGTGGCAGCGCTTCACGCACAGCACGTGCGCCTCACcg                                                                                                          >  1:286161/1‑150 (MQ=255)                                            tCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACcg                                                                                                          >  1:331313/1‑150 (MQ=255)                                              gACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTgc                                                                                                                   >  2:452818/1‑139 (MQ=255)                                              gACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTgc                                                                                                                   <  1:452818/139‑1 (MQ=255)                                                ccGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGa                                                                                                      <  1:538074/150‑1 (MQ=255)                                                      ccTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGAc                                                                                                                       <  1:217955/127‑1 (MQ=255)                                                      ccTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGAc                                                                                                                       >  2:217955/1‑127 (MQ=255)                                                        gcgatttcttcCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGt                                                                                              >  1:626344/6‑150 (MQ=255)                                                         gCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGtt                                                                                             >  2:744238/1‑150 (MQ=255)                                                         gCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGtt                                                                                             >  1:373200/1‑150 (MQ=255)                                                          cAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTg                                                                                            >  2:328431/1‑150 (MQ=255)                                                                      aaTCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGt                                                                                <  2:694807/150‑1 (MQ=255)                                                                                 ccccGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGa                                                                                                      >  2:235216/1‑117 (MQ=255)                                                                                 ccccGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGa                                                                                                      <  1:235216/117‑1 (MQ=255)                                                                                 ccccGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTAc                                                                     >  1:227009/1‑150 (MQ=255)                                                                                 ccccGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCGGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTAc                                                                     >  1:660585/1‑150 (MQ=255)                                                                                  cccGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACa                                                                                                                           <  1:662139/95‑1 (MQ=255)                                                                                  cccGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACa                                                                                                                           >  2:662139/1‑95 (MQ=255)                                                                                   ccGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTACCg                                                                   <  1:744238/150‑1 (MQ=255)                                                                                   ccGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTACCg                                                                   <  2:725209/150‑1 (MQ=255)                                                                                      gCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGt                                                                                       >  1:404717/1‑127 (MQ=255)                                                                                      gCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGt                                                                                       <  2:404717/127‑1 (MQ=255)                                                                                              ttGCTGGTGACCAGCCTCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTACCGGACTGCGCGGc                                                        >  1:235603/1‑150 (MQ=255)                                                                                                      ggacaggcgcaggcgcgccaggtgccagcctggccgctggcggctgTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTACCGGCCTGCGCGGCCAGGCACt                                                >  2:503719‑M2/47‑150 (MQ=255)                                                                                                          aggcgcaggcgcgccaggtgccagcctggccgctggcggctgTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGtt                                                                                             <  2:316728‑M2/59‑1 (MQ=255)                                                                                                          aggcgcaggcgcgccaggtgccagcctggccgctggcggctgTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGtt                                                                                             >  1:316728‑M2/43‑101 (MQ=255)                                                                                                            ccgccAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTg                                                                                            >  2:485377/1‑100 (MQ=255)                                                                                                            ccgccAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTg                                                                                            <  1:485377/100‑1 (MQ=255)                                                                                                             gcaggcgcgccaggtgccagcctggcgcgcctgcgcctgTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTTCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTACCGGCCTGCGCGGCCAGGCACTGGACAAc                                         >  2:273192‑M2/40‑150 (MQ=255)                                                                                                                  gCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTACCGGc                                                                 >  2:383547/1‑121 (MQ=255)                                                                                                                  gCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTACCGGc                                                                 <  1:383547/121‑1 (MQ=255)                                                                                                                      ccAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTACCGGCCTGCGCGGCCAGGCACTGGACAACCTGATCcag                                >  2:88605/1‑150 (MQ=255)                                                                                                                       cAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTACCGGCCTGCGCGGCCAGGCACTGGACAAc                                         >  1:135498/1‑140 (MQ=255)                                                                                                                       cAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTACCGGCCTGCGCGGCCAGGCACTGGACAAc                                         <  2:135498/140‑1 (MQ=255)                                                                                                                          ggtgccagcctggccgctggcggctgTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTACCGGCCTGCGCGGCCAGGCACTGGACAACCTGATCcagcgca                            <  1:503719‑M2/124‑1 (MQ=255)                                                                                                                                 acTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGACGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTACCGGCCTGCGCGGCCAGGCACTGGACAACCTGATCCAGCGCAGCGACgg                     >  2:82130/2‑150 (MQ=255)                                                                                                                                     gcgcgcCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTACCGGCCTGCGCGGCCAGGCACTGGACAACCTGATCCAGCGCAGCGACGGCTgg                 >  2:179927/1‑150 (MQ=255)                                                                                                                                             gcgcctgTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTACCGGCCTGCGCGGCCAGGCACTGGACAACCTGATCCAGCGCAGCGACGGCTGGGTGGCCgg         >  2:13196/1‑150 (MQ=255)                                                                                                                                                   gTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTACCGGCCTGCGCGGCCAGGCACTGGACAACCTGATCCAGCGCAGCGACGGCTGGGTGGCCGCGTTGCg   >  2:154039‑M2/2‑150 (MQ=255)                                                                                                                                                    tCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTACCGGCCTGCGCGGCCAGGCACTGGACAACCTGATCCAGCGCAGCGACGGCTGGGTGGCCGGGTTGCGt  <  2:227009/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CTGCTGGTACTGGACGACTATCACCTGGCCCAGGGGCCGGTGCTCGACCGTTGCCTGCAGTTCTTCCTCAATCACCTGCCCCCCGGCCTGGTGTTGCTGGTGACCAGCCGCCAGCGGCCAGGCTGGCACCTGGCGCGCCTGCGCCTGTCCCGGCAGTTGGTCGAGCTTAACGAACAGGACCTGCGCCTCACCGCGGATGAGTCGTTGGCAGTGATCGGTCGCCAGCCTACCGGCCTGCGCGGCCAGGCACTGGACAACCTGATCCAGCGCAGCGACGGCTGGGTGGCCGGGTTGCGT  >  NC_002947/884534‑884830

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.